Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
VPS9D1Q9Y2B5 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
VPS9D1Q9Y2B5 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
VPS9D1Q9Y2B5 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 CTAGE11P-201ENST00000451540 2353 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RNU5B-2P-201ENST00000363036 113 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RNU6-1078P-201ENST00000364522 103 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RNU6-61P-201ENST00000365528 109 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 MIR199B-201ENST00000384849 110 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RNU6-550P-201ENST00000391057 101 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 ERMN-202ENST00000409216 746 ntTSL 4 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RN7SKP86-201ENST00000410454 332 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC073069.1-201ENST00000428657 441 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 GAS5-211ENST00000432536 959 ntTSL 2 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AL034399.1-201ENST00000451535 380 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AL390728.3-201ENST00000452704 270 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC004692.1-201ENST00000455430 424 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 BX323845.2-201ENST00000458382 234 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RPL21P8-201ENST00000465083 535 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RN7SL160P-201ENST00000468558 284 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RN7SL91P-201ENST00000469313 291 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AP000893.1-201ENST00000474462 794 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 MRPL42P6-201ENST00000486397 371 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RN7SL182P-201ENST00000496499 300 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RN7SL775P-201ENST00000498361 336 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 SERF1AP1-201ENST00000514575 187 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RFPL4AP3-201ENST00000515267 345 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 RNU6-323P-201ENST00000521915 107 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 IGLJCOR18-201ENST00000584002 424 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC017100.2-201ENST00000584628 355 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 MIR7973-1-201ENST00000614683 76 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 OR7E161P-202ENST00000641994 1033 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 PARP4P1-201ENST00000435945 2337 ntBASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
VPS9D1Q9Y2B5 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 SNORA24.1-201ENST00000384401 135 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 MIR215-201ENST00000384858 110 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 MIR301B-201ENST00000390813 78 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AL445189.1-201ENST00000405722 338 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC079807.1-201ENST00000429993 481 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 HMGB1P4-201ENST00000455362 567 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 RPS4XP23-201ENST00000487801 237 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 RN7SL306P-201ENST00000492941 296 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 RNU6-488P-201ENST00000515918 99 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 SNORA31.18-201ENST00000517043 134 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC034114.1-201ENST00000520293 285 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AL049779.2-201ENST00000553847 315 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC109446.1-201ENST00000566172 220 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC243312.1-201ENST00000570582 275 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 MIR5705-201ENST00000579870 89 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 MIR4786-201ENST00000583954 80 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 Z83818.1-201ENST00000603584 150 ntBASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC7.11□□□□□ -1.27
VPS9D1Q9Y2B5 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms