Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 BTF3P8-201ENST00000414577 526 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 EIF4EP1-201ENST00000422311 642 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 PDSS1P1-201ENST00000422953 1114 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 OR4F13P-201ENST00000428478 931 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 ELOCP6-201ENST00000429066 328 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 PTGES3P1-201ENST00000439531 483 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 RPL23AP93-201ENST00000440847 484 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 AL162388.1-201ENST00000450912 352 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 ELOCP12-201ENST00000458706 328 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AP000893.1-201ENST00000474462 794 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 RN7SL41P-201ENST00000476144 297 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 snoZ278.1-201ENST00000517059 112 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 RNU6-1028P-201ENST00000517164 93 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 RN7SKP234-201ENST00000517173 224 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC019227.1-201ENST00000526902 510 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 NDUFS5P6-201ENST00000529136 295 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 DEFB109D-201ENST00000529497 240 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC084783.1-201ENST00000565846 910 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 MIR5096-201ENST00000583713 70 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC008782.1-201ENST00000603386 430 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC010680.3-201ENST00000604215 520 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AL390816.3-201ENST00000604527 1066 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC105429.2-201ENST00000610567 517 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 AC109454.4-201ENST00000623411 649 ntBASIC4.67□□□□□ -1.66
VPS28Q9UK41 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS28Q9UK41 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS28Q9UK41 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS28Q9UK41 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS28Q9UK41 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS28Q9UK41 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS28Q9UK41 MTND5P28-201ENST00000438005 1594 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 OR56B2P-202ENST00000641377 2453 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC092435.4-201ENST00000623012 4159 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 ANKRD36P1-201ENST00000344424 659 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 RNU1-108P-201ENST00000362556 161 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 RNU6-1279P-201ENST00000383917 103 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 MIR659-201ENST00000384963 97 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 GSTA8P-201ENST00000404253 637 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC027644.1-201ENST00000419595 298 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC009220.1-201ENST00000451614 275 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 MTATP6P14-201ENST00000455189 673 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 RPL5P30-201ENST00000465511 891 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC087385.1-201ENST00000475062 312 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 RN7SL481P-201ENST00000477764 299 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC104982.1-201ENST00000478775 574 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 SNX5P1-201ENST00000505757 1041 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 NDUFB4P12-201ENST00000513465 390 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC015912.2-201ENST00000571053 181 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 MIR4504-201ENST00000577413 92 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC090330.1-201ENST00000588646 764 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AL606834.3-201ENST00000602615 496 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 AP000238.1-201ENST00000608759 426 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC009269.6-201ENST00000621778 588 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 AC068620.4-201ENST00000636730 1182 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 RAD17P1-201ENST00000418130 2042 ntBASIC4.66□□□□□ -1.66
VPS28Q9UK41 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS28Q9UK41 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS28Q9UK41 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS28Q9UK41 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS28Q9UK41 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS28Q9UK41 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.66
VPS28Q9UK41 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS28Q9UK41 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
VPS28Q9UK41 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS28Q9UK41 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
VPS28Q9UK41 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS28Q9UK41 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS28Q9UK41 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
VPS28Q9UK41 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS28Q9UK41 OR56B2P-201ENST00000317102 954 ntBASIC4.65□□□□□ -1.67
VPS28Q9UK41 FABP12P1-201ENST00000401911 322 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms