Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU6-279P-201ENST00000391297 101 ntBASIC10.79□□□□□ -0.68
MSH5O43196 RNA5SP265-201ENST00000411023 111 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AL513302.1-201ENST00000415679 428 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC10.79□□□□□ -0.68
MSH5O43196 CTBP2P1-201ENST00000431853 245 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AC079354.2-201ENST00000453523 154 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AL355076.1-201ENST00000484315 270 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AC108120.1-201ENST00000506543 991 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC10.79□□□□□ -0.68
MSH5O43196 AC124067.1-201ENST00000517897 169 ntTSL 3 BASIC10.79□□□□□ -0.68
MSH5O43196 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC10.79□□□□□ -0.68
MSH5O43196 AC109810.1-201ENST00000534066 224 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AC233290.2-201ENST00000552852 390 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AC013452.1-201ENST00000560630 598 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC10.79□□□□□ -0.68
MSH5O43196 RPL23AP90-201ENST00000603820 236 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AP001554.1-201ENST00000604533 376 ntBASIC10.79□□□□□ -0.68
MSH5O43196 AC114477.1-201ENST00000605097 605 ntBASIC10.79□□□□□ -0.68
MSH5O43196 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC10.79□□□□□ -0.68
MSH5O43196 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC10.79□□□□□ -0.68
MSH5O43196 PROM1-210ENST00000510224 4006 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.68
MSH5O43196 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.68
MSH5O43196 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
MSH5O43196 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
MSH5O43196 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.68
MSH5O43196 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC10.79□□□□□ -0.68
MSH5O43196 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC10.79□□□□□ -0.68
MSH5O43196 NLRP14-201ENST00000299481 3628 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
MSH5O43196 ZNF182-201ENST00000376943 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
MSH5O43196 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC10.78□□□□□ -0.68
MSH5O43196 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC10.78□□□□□ -0.68
MSH5O43196 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 PHF6-204ENST00000370803 4489 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC10.78□□□□□ -0.68
MSH5O43196 PRNT-201ENST00000326539 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 RNU6-1134P-201ENST00000365156 101 ntBASIC10.78□□□□□ -0.68
MSH5O43196 SNORD58C-201ENST00000365223 64 ntBASIC10.78□□□□□ -0.68
MSH5O43196 PUDPP1-201ENST00000421058 495 ntBASIC10.78□□□□□ -0.68
MSH5O43196 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC10.78□□□□□ -0.68
MSH5O43196 RPL12P15-201ENST00000433385 499 ntBASIC10.78□□□□□ -0.68
MSH5O43196 Z97634.1-203ENST00000435229 471 ntBASIC10.78□□□□□ -0.68
MSH5O43196 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC10.78□□□□□ -0.68
MSH5O43196 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC10.78□□□□□ -0.68
MSH5O43196 RN7SL869P-201ENST00000497032 300 ntBASIC10.78□□□□□ -0.68
MSH5O43196 IGKV1-27-201ENST00000498435 382 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
MSH5O43196 RNU6-488P-201ENST00000515918 99 ntBASIC10.78□□□□□ -0.68
MSH5O43196 RNU6-191P-201ENST00000516295 94 ntBASIC10.78□□□□□ -0.68
MSH5O43196 RNU6-412P-201ENST00000516434 106 ntBASIC10.78□□□□□ -0.68
MSH5O43196 Y_RNA.689-201ENST00000516589 107 ntBASIC10.78□□□□□ -0.68
MSH5O43196 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC10.78□□□□□ -0.68
MSH5O43196 AC090151.1-201ENST00000520784 730 ntBASIC10.78□□□□□ -0.68
MSH5O43196 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC10.78□□□□□ -0.68
MSH5O43196 HMGN1P26-201ENST00000558737 303 ntBASIC10.78□□□□□ -0.68
MSH5O43196 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC10.78□□□□□ -0.68
MSH5O43196 MIR8076-201ENST00000611401 83 ntBASIC10.78□□□□□ -0.68
MSH5O43196 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC10.78□□□□□ -0.68
MSH5O43196 AP004289.1-201ENST00000436307 2205 ntBASIC10.78□□□□□ -0.68
MSH5O43196 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 AL133467.3-203ENST00000461160 3574 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 NUCB2-208ENST00000529010 2274 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 ATAD2-205ENST00000521903 5143 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC10.78□□□□□ -0.68
MSH5O43196 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC10.78□□□□□ -0.68
MSH5O43196 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC10.78□□□□□ -0.68
MSH5O43196 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 ZNF350-201ENST00000243644 2338 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 HMGB4-203ENST00000519684 2343 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
MSH5O43196 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC10.77□□□□□ -0.68
MSH5O43196 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
MSH5O43196 WIPF3-203ENST00000409290 4002 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.68
MSH5O43196 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
MSH5O43196 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
MSH5O43196 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
MSH5O43196 GPM6B-201ENST00000316715 3275 ntAPPRIS ALT1 TSL 2 BASIC10.77□□□□□ -0.68
MSH5O43196 ZNF577-201ENST00000301399 3074 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
MSH5O43196 AC107021.2-201ENST00000567714 2095 ntBASIC10.77□□□□□ -0.69
MSH5O43196 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
MSH5O43196 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
MSH5O43196 RNU6-626P-201ENST00000363354 107 ntBASIC10.77□□□□□ -0.69
MSH5O43196 RNU6-318P-201ENST00000384283 103 ntBASIC10.77□□□□□ -0.69
MSH5O43196 RNU6-768P-201ENST00000384683 107 ntBASIC10.77□□□□□ -0.69
MSH5O43196 NHP2P2-201ENST00000396362 460 ntBASIC10.77□□□□□ -0.69
MSH5O43196 ACTP1-201ENST00000440793 383 ntBASIC10.77□□□□□ -0.69
MSH5O43196 B4GALNT2P1-201ENST00000508857 307 ntBASIC10.77□□□□□ -0.69
MSH5O43196 AC018653.2-201ENST00000540190 238 ntBASIC10.77□□□□□ -0.69
MSH5O43196 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC10.77□□□□□ -0.69
MSH5O43196 AL590808.1-201ENST00000618696 141 ntBASIC10.77□□□□□ -0.69
MSH5O43196 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
MSH5O43196 BCL9P1-201ENST00000506012 2561 ntBASIC10.77□□□□□ -0.69
MSH5O43196 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
MSH5O43196 POU2F3-201ENST00000260264 2903 ntTSL 2 BASIC10.77□□□□□ -0.69
MSH5O43196 CNR1-204ENST00000428600 1550 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
MSH5O43196 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
MSH5O43196 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC10.77□□□□□ -0.69
MSH5O43196 KCNMA1-214ENST00000434208 4055 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
MSH5O43196 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 466.8 ms