Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 C2orf69P4-201ENST00000565394 541 ntBASIC18.68■□□□□ 0.58
VPS4AQ9UN37 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 AC023632.3-201ENST00000521633 145 ntBASIC18.67■□□□□ 0.58
VPS4AQ9UN37 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VPS4AQ9UN37 PHGDH-210ENST00000641115 1638 ntBASIC18.67■□□□□ 0.58
VPS4AQ9UN37 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 AC087499.1-201ENST00000418141 1075 ntBASIC18.66■□□□□ 0.58
VPS4AQ9UN37 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 AL049637.2-201ENST00000641778 930 ntBASIC18.66■□□□□ 0.58
VPS4AQ9UN37 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4AQ9UN37 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.65■□□□□ 0.58
VPS4AQ9UN37 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms