Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 BX276092.5-203ENST00000456199 560 ntBASIC19.18■□□□□ 0.66
VPS13AQ96RL7 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 NUS1P1-201ENST00000446295 882 ntBASIC19.17■□□□□ 0.66
VPS13AQ96RL7 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS13AQ96RL7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 AC092865.5-201ENST00000545435 363 ntBASIC19.16■□□□□ 0.66
VPS13AQ96RL7 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS13AQ96RL7 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 AC091304.2-201ENST00000564639 760 ntBASIC19.15■□□□□ 0.66
VPS13AQ96RL7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 MIR1233-2-201ENST00000408138 82 ntBASIC19.15■□□□□ 0.66
VPS13AQ96RL7 MIR1233-1-201ENST00000408722 82 ntBASIC19.15■□□□□ 0.66
VPS13AQ96RL7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13AQ96RL7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.14■□□□□ 0.66
VPS13AQ96RL7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VPS13AQ96RL7 TUBB8P6-201ENST00000436895 1288 ntBASIC19.14■□□□□ 0.66
VPS13AQ96RL7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS13AQ96RL7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.14■□□□□ 0.66
VPS13AQ96RL7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 Z98882.1-201ENST00000622160 2253 ntBASIC19.14■□□□□ 0.65
VPS13AQ96RL7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 HLA-F-220ENST00000434407 884 ntBASIC19.14■□□□□ 0.65
VPS13AQ96RL7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS13AQ96RL7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms