Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 KRT16P6-202ENST00000425692 1426 ntBASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 POLD2P1-201ENST00000511220 997 ntBASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SMC1BQ8NDV3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 AC005104.2-201ENST00000427818 678 ntBASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 WDR6-223ENST00000627177 207 ntTSL 2 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SMC1BQ8NDV3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
SMC1BQ8NDV3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 TSPY22P-201ENST00000427496 604 ntBASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SMC1BQ8NDV3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 PMS2P2-201ENST00000425039 1128 ntBASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 AC104819.1-201ENST00000504587 486 ntBASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 ABR-217ENST00000572441 563 ntTSL 4 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 AC138894.3-201ENST00000603787 634 ntBASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 AL691403.2-201ENST00000618460 490 ntBASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
SMC1BQ8NDV3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 RNA5SP419-201ENST00000515908 135 ntBASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
SMC1BQ8NDV3 TERC-201ENST00000602385 541 ntBASIC22.93■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms