Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 AL161938.1-201ENST00000569833 2180 ntBASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN3Q8NCR9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 AC087239.1-201ENST00000622671 572 ntBASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC15.43■□□□□ 0.06
CLRN3Q8NCR9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 Z98044.1-201ENST00000632503 1764 ntBASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
CLRN3Q8NCR9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms