Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A4P53420 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.91
COL4A4P53420 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A4P53420 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
COL4A4P53420 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A4P53420 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A4P53420 PHGDH-210ENST00000641115 1638 ntBASIC20.77■□□□□ 0.91
COL4A4P53420 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A4P53420 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
COL4A4P53420 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A4P53420 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.77■□□□□ 0.91
COL4A4P53420 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A4P53420 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
COL4A4P53420 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A4P53420 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.77■□□□□ 0.91
COL4A4P53420 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
COL4A4P53420 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.77■□□□□ 0.91
COL4A4P53420 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
COL4A4P53420 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
COL4A4P53420 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A4P53420 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
COL4A4P53420 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.76■□□□□ 0.91
COL4A4P53420 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.76■□□□□ 0.91
COL4A4P53420 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A4P53420 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A4P53420 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A4P53420 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
COL4A4P53420 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A4P53420 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 AP000347.1-202ENST00000435868 847 ntBASIC20.75■□□□□ 0.91
COL4A4P53420 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A4P53420 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 AL353719.1-201ENST00000566847 864 ntBASIC20.75■□□□□ 0.91
COL4A4P53420 AL512604.3-201ENST00000569583 964 ntBASIC20.75■□□□□ 0.91
COL4A4P53420 AC111152.3-201ENST00000569699 673 ntBASIC20.75■□□□□ 0.91
COL4A4P53420 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
COL4A4P53420 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A4P53420 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A4P53420 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A4P53420 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A4P53420 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
COL4A4P53420 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A4P53420 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A4P53420 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A4P53420 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A4P53420 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A4P53420 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A4P53420 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A4P53420 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL4A4P53420 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A4P53420 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A4P53420 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A4P53420 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A4P53420 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A4P53420 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A4P53420 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
COL4A4P53420 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A4P53420 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 CA15P1-201ENST00000481698 905 ntBASIC20.73■□□□□ 0.91
COL4A4P53420 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A4P53420 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A4P53420 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL4A4P53420 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms