Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.53■□□□□ 0.88
LHX1P48742 TREX1-205ENST00000625293 1783 ntBASIC20.53■□□□□ 0.88
LHX1P48742 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.53■□□□□ 0.88
LHX1P48742 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.53■□□□□ 0.88
LHX1P48742 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LHX1P48742 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LHX1P48742 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.52■□□□□ 0.88
LHX1P48742 AC096733.2-201ENST00000609937 1394 ntBASIC20.52■□□□□ 0.88
LHX1P48742 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
LHX1P48742 CRYGFP-201ENST00000418459 633 ntBASIC20.52■□□□□ 0.88
LHX1P48742 ECEL1P3-201ENST00000427961 737 ntBASIC20.52■□□□□ 0.88
LHX1P48742 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LHX1P48742 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.52■□□□□ 0.88
LHX1P48742 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.52■□□□□ 0.88
LHX1P48742 AC097493.4-201ENST00000641197 219 ntBASIC20.52■□□□□ 0.88
LHX1P48742 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LHX1P48742 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LHX1P48742 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LHX1P48742 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LHX1P48742 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LHX1P48742 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LHX1P48742 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.52■□□□□ 0.87
LHX1P48742 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.51■□□□□ 0.87
LHX1P48742 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.51■□□□□ 0.87
LHX1P48742 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LHX1P48742 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LHX1P48742 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.51■□□□□ 0.87
LHX1P48742 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.51■□□□□ 0.87
LHX1P48742 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.51■□□□□ 0.87
LHX1P48742 NAPSB-206ENST00000562112 1266 ntBASIC20.51■□□□□ 0.87
LHX1P48742 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.51■□□□□ 0.87
LHX1P48742 AC012306.2-201ENST00000609350 630 ntBASIC20.51■□□□□ 0.87
LHX1P48742 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.51■□□□□ 0.87
LHX1P48742 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.51■□□□□ 0.87
LHX1P48742 KRT8P9-201ENST00000558927 1449 ntBASIC20.51■□□□□ 0.87
LHX1P48742 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.51■□□□□ 0.87
LHX1P48742 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LHX1P48742 AC125437.2-201ENST00000625180 2167 ntBASIC20.51■□□□□ 0.87
LHX1P48742 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.5■□□□□ 0.87
LHX1P48742 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.5■□□□□ 0.87
LHX1P48742 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.5■□□□□ 0.87
LHX1P48742 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.5■□□□□ 0.87
LHX1P48742 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.5■□□□□ 0.87
LHX1P48742 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.5■□□□□ 0.87
LHX1P48742 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LHX1P48742 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.5■□□□□ 0.87
LHX1P48742 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LHX1P48742 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.5■□□□□ 0.87
LHX1P48742 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
LHX1P48742 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.49■□□□□ 0.87
LHX1P48742 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.49■□□□□ 0.87
LHX1P48742 MFAP1P1-201ENST00000442257 1255 ntBASIC20.49■□□□□ 0.87
LHX1P48742 C2orf69P3-201ENST00000565542 1120 ntBASIC20.49■□□□□ 0.87
LHX1P48742 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.49■□□□□ 0.87
LHX1P48742 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LHX1P48742 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.49■□□□□ 0.87
LHX1P48742 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LHX1P48742 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.48■□□□□ 0.87
LHX1P48742 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LHX1P48742 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LHX1P48742 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LHX1P48742 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LHX1P48742 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms