Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
RFX3P48380 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.16■□□□□ 0.5
RFX3P48380 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.16■□□□□ 0.5
RFX3P48380 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.16■□□□□ 0.5
RFX3P48380 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.16■□□□□ 0.5
RFX3P48380 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.16■□□□□ 0.5
RFX3P48380 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.16■□□□□ 0.5
RFX3P48380 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.15■□□□□ 0.5
RFX3P48380 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.15■□□□□ 0.5
RFX3P48380 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 BX323043.1-201ENST00000641006 1765 ntBASIC18.15■□□□□ 0.5
RFX3P48380 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
RFX3P48380 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
RFX3P48380 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.15■□□□□ 0.5
RFX3P48380 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.15■□□□□ 0.5
RFX3P48380 PRKY-204ENST00000533551 1019 ntBASIC18.15■□□□□ 0.5
RFX3P48380 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.15■□□□□ 0.5
RFX3P48380 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.15■□□□□ 0.5
RFX3P48380 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RFX3P48380 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
RFX3P48380 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.5
RFX3P48380 TREX1-205ENST00000625293 1783 ntBASIC18.14■□□□□ 0.5
RFX3P48380 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RFX3P48380 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RFX3P48380 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.14■□□□□ 0.5
RFX3P48380 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
RFX3P48380 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX3P48380 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
RFX3P48380 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
RFX3P48380 AC116562.4-201ENST00000641316 2276 ntBASIC18.14■□□□□ 0.49
RFX3P48380 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
RFX3P48380 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RFX3P48380 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.14■□□□□ 0.49
RFX3P48380 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RFX3P48380 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
RFX3P48380 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.14■□□□□ 0.49
RFX3P48380 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.14■□□□□ 0.49
RFX3P48380 AC233263.1-201ENST00000578059 224 ntBASIC18.14■□□□□ 0.49
RFX3P48380 AC006058.3-201ENST00000606217 1069 ntBASIC18.14■□□□□ 0.49
RFX3P48380 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX3P48380 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
RFX3P48380 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
RFX3P48380 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX3P48380 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RFX3P48380 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.14■□□□□ 0.49
RFX3P48380 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
RFX3P48380 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.13■□□□□ 0.49
RFX3P48380 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
RFX3P48380 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.13■□□□□ 0.49
RFX3P48380 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.13■□□□□ 0.49
RFX3P48380 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.13■□□□□ 0.49
RFX3P48380 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 AC069544.1-201ENST00000609399 999 ntBASIC18.13■□□□□ 0.49
RFX3P48380 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.13■□□□□ 0.49
RFX3P48380 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RFX3P48380 AC018445.3-201ENST00000624177 1945 ntBASIC18.12■□□□□ 0.49
RFX3P48380 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.12■□□□□ 0.49
RFX3P48380 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms