Protein–RNA interactions for Protein: P43005

SLC1A1, Excitatory amino acid transporter 3, humanhuman

Predictions only

Length 524 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A1P43005 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SLC1A1P43005 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC1A1P43005 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SLC1A1P43005 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC1A1P43005 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC1A1P43005 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC1A1P43005 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SLC1A1P43005 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC1A1P43005 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SLC1A1P43005 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
SLC1A1P43005 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.25■□□□□ 0.83
SLC1A1P43005 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.25■□□□□ 0.83
SLC1A1P43005 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.25■□□□□ 0.83
SLC1A1P43005 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC1A1P43005 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC1A1P43005 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SLC1A1P43005 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.24■□□□□ 0.83
SLC1A1P43005 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SLC1A1P43005 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SLC1A1P43005 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SLC1A1P43005 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC1A1P43005 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.24■□□□□ 0.83
SLC1A1P43005 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.24■□□□□ 0.83
SLC1A1P43005 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
SLC1A1P43005 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.24■□□□□ 0.83
SLC1A1P43005 AL138781.2-201ENST00000617896 1843 ntBASIC20.24■□□□□ 0.83
SLC1A1P43005 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
SLC1A1P43005 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SLC1A1P43005 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SLC1A1P43005 AL049812.1-201ENST00000432563 2267 ntBASIC20.24■□□□□ 0.83
SLC1A1P43005 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
SLC1A1P43005 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC1A1P43005 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC1A1P43005 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.23■□□□□ 0.83
SLC1A1P43005 CROCCP3-202ENST00000420820 1947 ntBASIC20.23■□□□□ 0.83
SLC1A1P43005 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SLC1A1P43005 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
SLC1A1P43005 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
SLC1A1P43005 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC1A1P43005 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SLC1A1P43005 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SLC1A1P43005 UNC93B4-201ENST00000505679 747 ntBASIC20.23■□□□□ 0.83
SLC1A1P43005 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.23■□□□□ 0.83
SLC1A1P43005 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.23■□□□□ 0.83
SLC1A1P43005 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.23■□□□□ 0.83
SLC1A1P43005 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.23■□□□□ 0.83
SLC1A1P43005 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.23■□□□□ 0.83
SLC1A1P43005 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC1A1P43005 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.23■□□□□ 0.83
SLC1A1P43005 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC1A1P43005 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC1A1P43005 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
SLC1A1P43005 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC1A1P43005 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.23■□□□□ 0.83
SLC1A1P43005 AC120498.9-201ENST00000339021 3867 ntBASIC20.23■□□□□ 0.83
SLC1A1P43005 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC1A1P43005 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SLC1A1P43005 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SLC1A1P43005 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.22■□□□□ 0.83
SLC1A1P43005 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC1A1P43005 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SLC1A1P43005 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms