Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFSF9P41273 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.97■□□□□ 0.95
TNFSF9P41273 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
TNFSF9P41273 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.97■□□□□ 0.95
TNFSF9P41273 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.97■□□□□ 0.95
TNFSF9P41273 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.97■□□□□ 0.95
TNFSF9P41273 AC011298.2-201ENST00000617989 482 ntBASIC20.97■□□□□ 0.95
TNFSF9P41273 AC130371.2-201ENST00000619443 611 ntBASIC20.97■□□□□ 0.95
TNFSF9P41273 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFSF9P41273 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFSF9P41273 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFSF9P41273 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.97■□□□□ 0.95
TNFSF9P41273 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFSF9P41273 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFSF9P41273 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TNFSF9P41273 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.97■□□□□ 0.95
TNFSF9P41273 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFSF9P41273 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
TNFSF9P41273 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
TNFSF9P41273 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 UNC93B2-201ENST00000285383 730 ntBASIC20.96■□□□□ 0.95
TNFSF9P41273 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.96■□□□□ 0.95
TNFSF9P41273 AC004951.3-201ENST00000418645 1148 ntBASIC20.96■□□□□ 0.95
TNFSF9P41273 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.96■□□□□ 0.95
TNFSF9P41273 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
TNFSF9P41273 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.96■□□□□ 0.95
TNFSF9P41273 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.96■□□□□ 0.95
TNFSF9P41273 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFSF9P41273 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.96■□□□□ 0.95
TNFSF9P41273 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
TNFSF9P41273 KRT8P9-201ENST00000558927 1449 ntBASIC20.95■□□□□ 0.95
TNFSF9P41273 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.95■□□□□ 0.94
TNFSF9P41273 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TNFSF9P41273 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.95■□□□□ 0.94
TNFSF9P41273 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.95■□□□□ 0.94
TNFSF9P41273 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TNFSF9P41273 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.95■□□□□ 0.94
TNFSF9P41273 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.95■□□□□ 0.94
TNFSF9P41273 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.95■□□□□ 0.94
TNFSF9P41273 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TNFSF9P41273 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFSF9P41273 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TNFSF9P41273 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.94■□□□□ 0.94
TNFSF9P41273 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.94■□□□□ 0.94
TNFSF9P41273 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.94■□□□□ 0.94
TNFSF9P41273 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TNFSF9P41273 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TNFSF9P41273 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
TNFSF9P41273 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFSF9P41273 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFSF9P41273 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFSF9P41273 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFSF9P41273 MIR1238-201ENST00000408483 83 ntBASIC20.93■□□□□ 0.94
TNFSF9P41273 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFSF9P41273 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.93■□□□□ 0.94
TNFSF9P41273 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.93■□□□□ 0.94
TNFSF9P41273 AC073912.3-201ENST00000624414 853 ntBASIC20.93■□□□□ 0.94
TNFSF9P41273 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFSF9P41273 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.93■□□□□ 0.94
TNFSF9P41273 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.93■□□□□ 0.94
TNFSF9P41273 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TNFSF9P41273 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.93■□□□□ 0.94
TNFSF9P41273 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 SLC25A24-204ENST00000569674 2357 ntBASIC20.93■□□□□ 0.94
TNFSF9P41273 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFSF9P41273 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFSF9P41273 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFSF9P41273 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TNFSF9P41273 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms