Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BICD1-207ENST00000551848 1962 ntBASIC18.46■□□□□ 0.55
MSX2P35548 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.46■□□□□ 0.55
MSX2P35548 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 AP000997.3-201ENST00000623333 2250 ntBASIC18.46■□□□□ 0.55
MSX2P35548 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
MSX2P35548 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.46■□□□□ 0.55
MSX2P35548 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
MSX2P35548 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
MSX2P35548 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.46■□□□□ 0.55
MSX2P35548 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.46■□□□□ 0.55
MSX2P35548 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
MSX2P35548 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.46■□□□□ 0.55
MSX2P35548 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MSX2P35548 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.54
MSX2P35548 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.54
MSX2P35548 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.45■□□□□ 0.54
MSX2P35548 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.45■□□□□ 0.54
MSX2P35548 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.45■□□□□ 0.54
MSX2P35548 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
MSX2P35548 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.45■□□□□ 0.54
MSX2P35548 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.45■□□□□ 0.54
MSX2P35548 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.45■□□□□ 0.54
MSX2P35548 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 AC142381.2-201ENST00000566120 298 ntBASIC18.45■□□□□ 0.54
MSX2P35548 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MSX2P35548 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
MSX2P35548 AC079598.2-202ENST00000546624 1451 ntBASIC18.45■□□□□ 0.54
MSX2P35548 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
MSX2P35548 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSX2P35548 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
MSX2P35548 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.44■□□□□ 0.54
MSX2P35548 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MSX2P35548 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 AL354751.1-201ENST00000412768 1863 ntBASIC18.44■□□□□ 0.54
MSX2P35548 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.44■□□□□ 0.54
MSX2P35548 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
MSX2P35548 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.44■□□□□ 0.54
MSX2P35548 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.44■□□□□ 0.54
MSX2P35548 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.44■□□□□ 0.54
MSX2P35548 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.44■□□□□ 0.54
MSX2P35548 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSX2P35548 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.44■□□□□ 0.54
MSX2P35548 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.44■□□□□ 0.54
MSX2P35548 NOC2LP1-202ENST00000452600 2235 ntBASIC18.43■□□□□ 0.54
MSX2P35548 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.43■□□□□ 0.54
MSX2P35548 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
MSX2P35548 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.43■□□□□ 0.54
MSX2P35548 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
MSX2P35548 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.43■□□□□ 0.54
MSX2P35548 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.43■□□□□ 0.54
MSX2P35548 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
MSX2P35548 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
MSX2P35548 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.43■□□□□ 0.54
MSX2P35548 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 KRT18P61-201ENST00000585825 1298 ntBASIC18.43■□□□□ 0.54
MSX2P35548 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.43■□□□□ 0.54
MSX2P35548 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.43■□□□□ 0.54
MSX2P35548 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSX2P35548 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms