Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 Z98044.1-201ENST00000632503 1764 ntBASIC19.42■□□□□ 0.7
VIMP08670 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.42■□□□□ 0.7
VIMP08670 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.42■□□□□ 0.7
VIMP08670 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.42■□□□□ 0.7
VIMP08670 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VIMP08670 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.42■□□□□ 0.7
VIMP08670 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.42■□□□□ 0.7
VIMP08670 AC131212.1-201ENST00000613771 668 ntBASIC19.42■□□□□ 0.7
VIMP08670 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VIMP08670 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VIMP08670 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VIMP08670 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.42■□□□□ 0.7
VIMP08670 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VIMP08670 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VIMP08670 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.41■□□□□ 0.7
VIMP08670 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.41■□□□□ 0.7
VIMP08670 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VIMP08670 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VIMP08670 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.41■□□□□ 0.7
VIMP08670 AC243732.1-201ENST00000612648 864 ntBASIC19.41■□□□□ 0.7
VIMP08670 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VIMP08670 AC135279.3-201ENST00000610945 1311 ntBASIC19.41■□□□□ 0.7
VIMP08670 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 AC008406.3-201ENST00000620001 1374 ntBASIC19.41■□□□□ 0.7
VIMP08670 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.41■□□□□ 0.7
VIMP08670 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 RBM17P2-201ENST00000616397 1405 ntBASIC19.41■□□□□ 0.7
VIMP08670 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VIMP08670 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 FP475955.4-201ENST00000623131 1990 ntBASIC19.41■□□□□ 0.7
VIMP08670 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VIMP08670 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VIMP08670 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
VIMP08670 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VIMP08670 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.4■□□□□ 0.7
VIMP08670 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.4■□□□□ 0.7
VIMP08670 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 CDV3P1-201ENST00000471403 739 ntBASIC19.4■□□□□ 0.7
VIMP08670 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.4■□□□□ 0.7
VIMP08670 DUX4L2-201ENST00000561772 1275 ntBASIC19.4■□□□□ 0.7
VIMP08670 AC027682.1-201ENST00000562846 899 ntBASIC19.4■□□□□ 0.7
VIMP08670 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.4■□□□□ 0.7
VIMP08670 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
VIMP08670 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.4■□□□□ 0.7
VIMP08670 DUX4L6-201ENST00000626483 1275 ntBASIC19.4■□□□□ 0.7
VIMP08670 DUX4L1-201ENST00000627662 1275 ntBASIC19.4■□□□□ 0.7
VIMP08670 DUX4L8-201ENST00000629013 1275 ntBASIC19.4■□□□□ 0.7
VIMP08670 DUX4L3-201ENST00000630187 1275 ntBASIC19.4■□□□□ 0.7
VIMP08670 DUX4L7-201ENST00000630678 1275 ntBASIC19.4■□□□□ 0.7
VIMP08670 DUX4L5-201ENST00000630834 1275 ntBASIC19.4■□□□□ 0.7
VIMP08670 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.4■□□□□ 0.7
VIMP08670 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VIMP08670 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.4■□□□□ 0.7
VIMP08670 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.4■□□□□ 0.7
VIMP08670 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 AC087633.2-202ENST00000565166 1439 ntBASIC19.4■□□□□ 0.7
VIMP08670 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.4■□□□□ 0.7
VIMP08670 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VIMP08670 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VIMP08670 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VIMP08670 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms