Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 AF186192.3-201ENST00000583427 947 ntBASIC20.27■□□□□ 0.84
APOEP02649 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
APOEP02649 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
APOEP02649 KRT8P8-201ENST00000434750 1448 ntBASIC20.27■□□□□ 0.83
APOEP02649 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
APOEP02649 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
APOEP02649 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
APOEP02649 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.26■□□□□ 0.83
APOEP02649 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.26■□□□□ 0.83
APOEP02649 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.26■□□□□ 0.83
APOEP02649 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
APOEP02649 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
APOEP02649 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.26■□□□□ 0.83
APOEP02649 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.26■□□□□ 0.83
APOEP02649 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.26■□□□□ 0.83
APOEP02649 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
APOEP02649 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
APOEP02649 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.26■□□□□ 0.83
APOEP02649 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
APOEP02649 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.25■□□□□ 0.83
APOEP02649 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
APOEP02649 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.25■□□□□ 0.83
APOEP02649 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.25■□□□□ 0.83
APOEP02649 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.25■□□□□ 0.83
APOEP02649 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.25■□□□□ 0.83
APOEP02649 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.25■□□□□ 0.83
APOEP02649 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.25■□□□□ 0.83
APOEP02649 AL353708.3-201ENST00000610272 989 ntBASIC20.25■□□□□ 0.83
APOEP02649 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
APOEP02649 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
APOEP02649 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
APOEP02649 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
APOEP02649 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
APOEP02649 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.24■□□□□ 0.83
APOEP02649 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
APOEP02649 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
APOEP02649 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.24■□□□□ 0.83
APOEP02649 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.24■□□□□ 0.83
APOEP02649 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.24■□□□□ 0.83
APOEP02649 AC073195.1-201ENST00000607241 877 ntBASIC20.24■□□□□ 0.83
APOEP02649 AL049637.2-201ENST00000641778 930 ntBASIC20.24■□□□□ 0.83
APOEP02649 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.24■□□□□ 0.83
APOEP02649 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
APOEP02649 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
APOEP02649 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
APOEP02649 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
APOEP02649 NIFKP9-201ENST00000419265 221 ntBASIC20.23■□□□□ 0.83
APOEP02649 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.23■□□□□ 0.83
APOEP02649 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.23■□□□□ 0.83
APOEP02649 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.23■□□□□ 0.83
APOEP02649 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.23■□□□□ 0.83
APOEP02649 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.23■□□□□ 0.83
APOEP02649 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms