Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TOP3BO95985 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TOP3BO95985 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TOP3BO95985 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TOP3BO95985 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TOP3BO95985 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
TOP3BO95985 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TOP3BO95985 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TOP3BO95985 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.8■□□□□ 0.76
TOP3BO95985 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.8■□□□□ 0.76
TOP3BO95985 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.8■□□□□ 0.76
TOP3BO95985 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.8■□□□□ 0.76
TOP3BO95985 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TOP3BO95985 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.8■□□□□ 0.76
TOP3BO95985 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.8■□□□□ 0.76
TOP3BO95985 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.79■□□□□ 0.76
TOP3BO95985 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TOP3BO95985 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
TOP3BO95985 KRT8P9-201ENST00000558927 1449 ntBASIC19.79■□□□□ 0.76
TOP3BO95985 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.79■□□□□ 0.76
TOP3BO95985 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TOP3BO95985 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.79■□□□□ 0.76
TOP3BO95985 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TOP3BO95985 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.79■□□□□ 0.76
TOP3BO95985 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.79■□□□□ 0.76
TOP3BO95985 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TOP3BO95985 AC120498.8-201ENST00000614275 531 ntBASIC19.79■□□□□ 0.76
TOP3BO95985 AC006557.6-201ENST00000623071 864 ntBASIC19.79■□□□□ 0.76
TOP3BO95985 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TOP3BO95985 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
TOP3BO95985 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TOP3BO95985 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.78■□□□□ 0.76
TOP3BO95985 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.78■□□□□ 0.76
TOP3BO95985 TNXA-203ENST00000507684 2038 ntBASIC19.78■□□□□ 0.76
TOP3BO95985 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.78■□□□□ 0.76
TOP3BO95985 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
TOP3BO95985 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.78■□□□□ 0.76
TOP3BO95985 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.78■□□□□ 0.76
TOP3BO95985 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.78■□□□□ 0.76
TOP3BO95985 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
TOP3BO95985 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TOP3BO95985 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.77■□□□□ 0.76
TOP3BO95985 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
TOP3BO95985 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.77■□□□□ 0.76
TOP3BO95985 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.77■□□□□ 0.76
TOP3BO95985 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.77■□□□□ 0.76
TOP3BO95985 NTF6B-201ENST00000591913 560 ntBASIC19.77■□□□□ 0.76
TOP3BO95985 AC145285.6-201ENST00000604632 637 ntBASIC19.77■□□□□ 0.76
TOP3BO95985 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
TOP3BO95985 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 BX323043.1-201ENST00000641006 1765 ntBASIC19.77■□□□□ 0.76
TOP3BO95985 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TOP3BO95985 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
TOP3BO95985 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
TOP3BO95985 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
TOP3BO95985 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
TOP3BO95985 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TOP3BO95985 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.76■□□□□ 0.75
TOP3BO95985 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.76■□□□□ 0.75
TOP3BO95985 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.76■□□□□ 0.75
TOP3BO95985 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.76■□□□□ 0.75
TOP3BO95985 AL121894.2-201ENST00000602977 491 ntBASIC19.76■□□□□ 0.75
TOP3BO95985 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.76■□□□□ 0.75
TOP3BO95985 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.76■□□□□ 0.75
TOP3BO95985 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TOP3BO95985 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms