Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC24.37■■□□□ 1.49
NPHP1O15259 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 MED17-221ENST00000639724 2317 ntTSL 5 BASIC24.36■■□□□ 1.49
NPHP1O15259 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP1O15259 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP1O15259 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP1O15259 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP1O15259 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC24.36■■□□□ 1.49
NPHP1O15259 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP1O15259 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP1O15259 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.36■■□□□ 1.49
NPHP1O15259 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP1O15259 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP1O15259 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP1O15259 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.36■■□□□ 1.49
NPHP1O15259 AL023973.1-201ENST00000624619 620 ntBASIC24.36■■□□□ 1.49
NPHP1O15259 AL121956.5-201ENST00000625261 221 ntBASIC24.36■■□□□ 1.49
NPHP1O15259 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP1O15259 IER3-202ENST00000376377 1350 ntBASIC24.36■■□□□ 1.49
NPHP1O15259 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP1O15259 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP1O15259 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP1O15259 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
NPHP1O15259 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC24.35■■□□□ 1.49
NPHP1O15259 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
NPHP1O15259 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC24.35■■□□□ 1.49
NPHP1O15259 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC24.35■■□□□ 1.49
NPHP1O15259 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC24.35■■□□□ 1.49
NPHP1O15259 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.35■■□□□ 1.49
NPHP1O15259 WDR88-203ENST00000592765 651 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP1O15259 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.35■■□□□ 1.49
NPHP1O15259 AL023803.3-201ENST00000615559 522 ntBASIC24.35■■□□□ 1.49
NPHP1O15259 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP1O15259 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC24.34■■□□□ 1.49
NPHP1O15259 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
NPHP1O15259 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC24.34■■□□□ 1.49
NPHP1O15259 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.34■■□□□ 1.49
NPHP1O15259 AL671277.2-201ENST00000458060 996 ntBASIC24.34■■□□□ 1.49
NPHP1O15259 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC24.34■■□□□ 1.49
NPHP1O15259 AL121894.2-201ENST00000602977 491 ntBASIC24.34■■□□□ 1.49
NPHP1O15259 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC24.34■■□□□ 1.49
NPHP1O15259 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC24.34■■□□□ 1.49
NPHP1O15259 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP1O15259 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24.33■■□□□ 1.49
NPHP1O15259 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.33■■□□□ 1.49
NPHP1O15259 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
NPHP1O15259 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC24.33■■□□□ 1.49
NPHP1O15259 KRT18P48-201ENST00000434763 852 ntBASIC24.33■■□□□ 1.49
NPHP1O15259 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
NPHP1O15259 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC24.33■■□□□ 1.49
NPHP1O15259 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.33■■□□□ 1.49
NPHP1O15259 KRT126P-201ENST00000549467 1181 ntBASIC24.33■■□□□ 1.49
NPHP1O15259 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC24.33■■□□□ 1.49
NPHP1O15259 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
NPHP1O15259 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
NPHP1O15259 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC24.33■■□□□ 1.49
NPHP1O15259 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP1O15259 LINC01465-201ENST00000408887 1940 ntBASIC24.33■■□□□ 1.49
NPHP1O15259 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.48
NPHP1O15259 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC24.33■■□□□ 1.48
NPHP1O15259 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
NPHP1O15259 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NPHP1O15259 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC24.32■■□□□ 1.48
NPHP1O15259 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NPHP1O15259 TOLLIP-AS1-201ENST00000530897 939 ntBASIC24.32■■□□□ 1.48
NPHP1O15259 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms