Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 SAPCD2P1-201ENST00000395413 1184 ntBASIC14.15□□□□□ -0.14
SMKR1H3BMG3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 CDV3P1-201ENST00000471403 739 ntBASIC14.15□□□□□ -0.14
SMKR1H3BMG3 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 AP001330.3-201ENST00000520123 633 ntBASIC14.15□□□□□ -0.14
SMKR1H3BMG3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 AC243732.1-201ENST00000612648 864 ntBASIC14.15□□□□□ -0.14
SMKR1H3BMG3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SMKR1H3BMG3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.15
SMKR1H3BMG3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 AL354811.1-201ENST00000610286 706 ntBASIC14.14□□□□□ -0.15
SMKR1H3BMG3 AC068880.1-201ENST00000507289 2297 ntBASIC14.14□□□□□ -0.15
SMKR1H3BMG3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMKR1H3BMG3 AC012313.1-201ENST00000593393 3059 ntBASIC14.13□□□□□ -0.15
SMKR1H3BMG3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 FP475955.4-201ENST00000623131 1990 ntBASIC14.13□□□□□ -0.15
SMKR1H3BMG3 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 AL354751.1-201ENST00000412768 1863 ntBASIC14.13□□□□□ -0.15
SMKR1H3BMG3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 IRS3P-201ENST00000223076 1006 ntBASIC14.13□□□□□ -0.15
SMKR1H3BMG3 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 CCDC92B-201ENST00000575506 885 ntBASIC14.13□□□□□ -0.15
SMKR1H3BMG3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms