Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM49D1C9J1S8 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 AC009113.1-201ENST00000570267 2443 ntBASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM49D1C9J1S8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 AC004911.1-201ENST00000416316 871 ntBASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM49D1C9J1S8 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM49D1C9J1S8 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms