Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 LINC01711-201ENST00000598340 967 ntBASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 LINC01465-201ENST00000408887 1940 ntBASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 AL121772.3-201ENST00000610840 674 ntBASIC17.44■□□□□ 0.38
COL6A6A6NMZ7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 IL9RP2-201ENST00000423948 1312 ntBASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 BX842568.4-201ENST00000421222 227 ntBASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 AL162741.1-201ENST00000565563 1558 ntBASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
COL6A6A6NMZ7 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 POLD2P1-201ENST00000511220 997 ntBASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 KRT8P26-201ENST00000534154 1276 ntBASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A6A6NMZ7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 AP000867.3-201ENST00000524675 377 ntBASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 AC064862.7-201ENST00000604520 867 ntBASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 AC140113.2-201ENST00000604370 208 ntBASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 KRT8P41-201ENST00000533985 1514 ntBASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms