Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 AL157384.1-201ENST00000445995 2473 ntBASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 TERF1P1-201ENST00000311003 1181 ntBASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 AC130371.2-201ENST00000619443 611 ntBASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV40A0A0B4J280 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 HIST1H2APS4-201ENST00000362070 348 ntBASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 DERL1-203ENST00000419562 918 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 AC008040.2-201ENST00000461049 708 ntBASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 AC091390.4-202ENST00000476426 537 ntBASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 AC128688.1-201ENST00000487626 519 ntBASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 EGLN1P1-201ENST00000531623 762 ntBASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 RNF165-205ENST00000588679 2904 ntBASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV40A0A0B4J280 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 LIN28AP1-201ENST00000429574 405 ntBASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 ATP5G1P1-201ENST00000448724 379 ntBASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 ECEL1P2-202ENST00000465689 757 ntBASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 AC096733.2-201ENST00000609937 1394 ntBASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV40A0A0B4J280 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms