Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC069209.1-201ENST00000619282 651 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.59□□□□□ -1.51
NUP88Q99567 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.59□□□□□ -1.51
NUP88Q99567 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.59□□□□□ -1.51
NUP88Q99567 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUP88Q99567 USP9YP4-201ENST00000424401 1745 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUP88Q99567 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
NUP88Q99567 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AL442639.1-201ENST00000625030 1899 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
NUP88Q99567 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 RNU6-619P-201ENST00000365146 108 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
NUP88Q99567 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 AL049697.2-201ENST00000403708 294 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 PRELID3BP11-201ENST00000414230 479 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 AC009302.1-201ENST00000417147 390 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP88Q99567 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP88Q99567 AC016712.1-201ENST00000431088 378 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 ATP5F1P1-201ENST00000433775 569 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 RPS17P8-201ENST00000434525 335 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP88Q99567 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.58□□□□□ -1.52
NUP88Q99567 COX6CP18-201ENST00000448769 222 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP88Q99567 NDUFA5P9-201ENST00000472609 340 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.58□□□□□ -1.52
NUP88Q99567 CEACAMP10-202ENST00000495431 496 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 RN7SL558P-201ENST00000497468 299 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AC087808.1-201ENST00000520501 361 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AC087465.1-201ENST00000560574 245 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 GTF2IP8-201ENST00000560687 584 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.58□□□□□ -1.52
NUP88Q99567 MIR5699-201ENST00000578903 90 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 RN7SL690P-201ENST00000582087 240 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
NUP88Q99567 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP88Q99567 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP88Q99567 AL031281.1-201ENST00000604049 488 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AL158042.1-201ENST00000605338 460 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.58□□□□□ -1.52
NUP88Q99567 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 AC124312.6-202ENST00000623624 418 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
NUP88Q99567 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.58□□□□□ -1.52
NUP88Q99567 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 CASC19-204ENST00000641001 2055 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.58□□□□□ -1.52
NUP88Q99567 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 TLK1P1-201ENST00000456760 2440 ntBASIC5.58□□□□□ -1.52
NUP88Q99567 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
NUP88Q99567 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NUP88Q99567 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
NUP88Q99567 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
NUP88Q99567 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
NUP88Q99567 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
NUP88Q99567 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.57□□□□□ -1.52
NUP88Q99567 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
NUP88Q99567 AC016716.1-201ENST00000265882 708 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
NUP88Q99567 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
NUP88Q99567 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 CASP3-203ENST00000393588 677 ntTSL 4 BASIC5.57□□□□□ -1.52
NUP88Q99567 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
NUP88Q99567 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 RPS4XP9-201ENST00000405151 780 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 AL133264.1-201ENST00000407157 562 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 MTND2P18-201ENST00000419962 1030 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 AL139421.1-201ENST00000423010 169 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC5.57□□□□□ -1.52
NUP88Q99567 DNAJC19P7-201ENST00000428811 344 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 AC068287.1-201ENST00000430283 295 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 AC016831.4-201ENST00000438302 307 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.57□□□□□ -1.52
NUP88Q99567 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC5.57□□□□□ -1.52
NUP88Q99567 MTND3P1-201ENST00000441336 220 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.57□□□□□ -1.52
NUP88Q99567 RPL21P134-201ENST00000453468 483 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 RPS3AP22-201ENST00000488297 769 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC5.57□□□□□ -1.52
NUP88Q99567 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.57□□□□□ -1.52
NUP88Q99567 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC5.57□□□□□ -1.52
NUP88Q99567 RNU6-885P-201ENST00000516607 104 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 RNA5SP135-201ENST00000517019 125 ntBASIC5.57□□□□□ -1.52
NUP88Q99567 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.57□□□□□ -1.52
NUP88Q99567 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.57□□□□□ -1.52
NUP88Q99567 CASC16-202ENST00000563844 610 ntTSL 3 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms