Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 RPS29P7-201ENST00000439662 171 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC006011.1-201ENST00000442758 349 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 IFNWP4-201ENST00000453148 294 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 CYCSP53-201ENST00000455540 265 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC078857.1-201ENST00000469870 667 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC110792.1-201ENST00000491826 472 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC146944.2-203ENST00000502493 354 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC139495.1-202ENST00000513164 354 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 AL136520.1-202ENST00000555494 763 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 TMF1P1-201ENST00000576058 373 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 AL353726.1-201ENST00000614041 1000 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 OR8B1P-202ENST00000641132 1178 ntBASIC4.2□□□□□ -1.74
TNFRSF4P43489 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TNFRSF4P43489 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
TNFRSF4P43489 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TNFRSF4P43489 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TNFRSF4P43489 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TNFRSF4P43489 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.2□□□□□ -1.74
TNFRSF4P43489 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
TNFRSF4P43489 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 RNU6-609P-201ENST00000365459 107 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 PTMAP2-201ENST00000397627 327 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 HMGB3P18-201ENST00000406327 590 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 PTGES3P2-201ENST00000407942 482 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 MIR1303-201ENST00000408625 86 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 RNU6ATAC-201ENST00000408749 126 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 SETP15-201ENST00000412724 337 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC073136.2-201ENST00000417282 849 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 TMX2P1-201ENST00000436507 708 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 TRBV8-2-201ENST00000475637 270 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 NDUFB4P12-201ENST00000513465 390 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC005255.1-201ENST00000593748 216 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 PCNAP1-202ENST00000595299 752 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 AL138721.1-201ENST00000616756 179 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 MIR6500-201ENST00000622700 86 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC005086.4-201ENST00000623065 213 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC015871.5-202ENST00000623252 701 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.19□□□□□ -1.74
TNFRSF4P43489 AC134882.1-201ENST00000603738 1676 ntBASIC4.19□□□□□ -1.74
TNFRSF4P43489 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFRSF4P43489 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 MIR16-2-201ENST00000362117 81 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 ATF1P1-201ENST00000406040 927 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 RNU4-27P-201ENST00000410889 139 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 AL158825.1-201ENST00000414735 521 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 AL357520.1-201ENST00000441557 453 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 RPL7P55-201ENST00000450522 746 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 RPL23AP71-201ENST00000470966 469 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 158.4 ms