Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CDX1P47902 INTS6P1-201ENST00000504674 2530 ntBASIC3.95□□□□□ -1.78
CDX1P47902 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.95□□□□□ -1.78
CDX1P47902 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CDX1P47902 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CDX1P47902 MFSD8-220ENST00000641243 1422 ntBASIC3.95□□□□□ -1.78
CDX1P47902 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CDX1P47902 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CDX1P47902 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 ECM1P2-201ENST00000503354 1577 ntBASIC3.94□□□□□ -1.78
CDX1P47902 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 AC011266.1-201ENST00000624119 3569 ntBASIC3.94□□□□□ -1.78
CDX1P47902 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 RNA5SP52-201ENST00000362448 134 ntBASIC3.94□□□□□ -1.78
CDX1P47902 RNU6-1243P-201ENST00000364028 107 ntBASIC3.94□□□□□ -1.78
CDX1P47902 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 RNU6-1279P-201ENST00000383917 103 ntBASIC3.94□□□□□ -1.78
CDX1P47902 MIR153-1-201ENST00000384914 90 ntBASIC3.94□□□□□ -1.78
CDX1P47902 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CDX1P47902 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CDX1P47902 AL079342.2-201ENST00000403367 482 ntBASIC3.94□□□□□ -1.78
CDX1P47902 MTCO3P31-201ENST00000405526 789 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AP002530.1-201ENST00000405705 684 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AL390316.1-201ENST00000406279 553 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC073264.1-201ENST00000411508 416 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC069218.2-201ENST00000411665 344 ntBASIC3.94□□□□□ -1.78
CDX1P47902 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 RAC1P3-201ENST00000416129 580 ntBASIC3.94□□□□□ -1.78
CDX1P47902 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.94□□□□□ -1.78
CDX1P47902 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 PRPF38AP2-201ENST00000438179 851 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.94□□□□□ -1.78
CDX1P47902 AL353748.1-201ENST00000440753 474 ntBASIC3.94□□□□□ -1.78
CDX1P47902 HMGB3P6-201ENST00000444896 598 ntBASIC3.94□□□□□ -1.78
CDX1P47902 HMGB1P16-201ENST00000447155 540 ntBASIC3.94□□□□□ -1.78
CDX1P47902 EXOSC3P1-201ENST00000448649 500 ntBASIC3.94□□□□□ -1.78
CDX1P47902 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 OTX2P1-201ENST00000450956 354 ntBASIC3.94□□□□□ -1.78
CDX1P47902 BX276092.4-201ENST00000452056 248 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 HIGD1AP8-201ENST00000453927 274 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC093166.2-201ENST00000455969 1017 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 RPS26P28-201ENST00000470806 348 ntBASIC3.94□□□□□ -1.78
CDX1P47902 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 AC140172.1-201ENST00000502928 141 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 AC093755.1-201ENST00000512950 1023 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 OR5AZ1P-201ENST00000527448 943 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.94□□□□□ -1.78
CDX1P47902 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 SLC25A36P1-201ENST00000590111 465 ntBASIC3.94□□□□□ -1.78
CDX1P47902 BNIP3P32-201ENST00000600015 554 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 AL365400.2-201ENST00000605604 902 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC020634.1-201ENST00000608701 549 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AC009237.15-201ENST00000610252 501 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AL049539.1-201ENST00000611964 459 ntBASIC3.94□□□□□ -1.78
CDX1P47902 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CDX1P47902 AC123767.1-202ENST00000620407 817 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 AC090506.2-201ENST00000624521 419 ntBASIC3.94□□□□□ -1.78
CDX1P47902 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC3.94□□□□□ -1.78
CDX1P47902 ZNRD1ASP-221ENST00000637794 1074 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CDX1P47902 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CDX1P47902 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
CDX1P47902 MAPK10-263ENST00000641052 4307 ntBASIC3.94□□□□□ -1.78
CDX1P47902 AL356489.2-201ENST00000566968 3528 ntBASIC3.94□□□□□ -1.78
CDX1P47902 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CDX1P47902 EOGT-210ENST00000615922 1931 ntBASIC3.93□□□□□ -1.78
CDX1P47902 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CDX1P47902 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
CDX1P47902 AC011978.2-201ENST00000569835 2054 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms