Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SNORD65.1-201ENST00000390889 71 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 ATP5F1P3-201ENST00000397213 657 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 COX6B1P1-201ENST00000415962 213 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC013429.2-201ENST00000418798 781 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 USP9YP22-201ENST00000438971 294 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 CBX1P4-201ENST00000439415 457 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 TXNP5-201ENST00000441043 315 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 RPL23AP76-201ENST00000441860 458 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 MTND5P2-201ENST00000442927 1142 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AL606662.1-201ENST00000445763 553 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 RPL23AP12-201ENST00000467573 473 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 MTCYBP16-201ENST00000509187 1129 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 RNA5SP373-201ENST00000517271 95 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC105031.1-201ENST00000518550 476 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 VIS1.1-201ENST00000610517 203 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AL161616.1-201ENST00000611867 286 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC018926.3-201ENST00000618841 406 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC135068.12-201ENST00000637370 931 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 OR8B1P-202ENST00000641132 1178 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AC073869.10-201ENST00000642016 354 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS4AQ9UN37 AL049737.1-201ENST00000413920 1403 ntBASIC4.88□□□□□ -1.63
VPS4AQ9UN37 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 A2MP1-204ENST00000566278 4130 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AL590139.1-201ENST00000416267 400 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC006960.1-201ENST00000419980 153 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 Z93242.1-201ENST00000427102 353 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 COX6CP13-201ENST00000428703 226 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 DNAJC19P7-201ENST00000428811 344 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 USP9YP31-201ENST00000431405 881 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC005345.1-201ENST00000431868 217 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 RPL35AP21-201ENST00000437667 333 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 YWHAQP9-201ENST00000445891 512 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 MTND1P29-201ENST00000448112 647 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS4AQ9UN37 NDUFA12P1-201ENST00000455914 406 ntBASIC4.87□□□□□ -1.63
VPS4AQ9UN37 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms