Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA1P49639 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA1P49639 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA1P49639 DEFB109D-201ENST00000529497 240 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 RFPL1S-203ENST00000539579 330 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AC010198.2-201ENST00000550612 259 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 HIGD1AP17-201ENST00000554576 276 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 AC068446.3-201ENST00000555285 382 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA1P49639 MIR3912-201ENST00000577566 105 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 SLC25A36P1-201ENST00000590111 465 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 VN1R88P-201ENST00000596787 292 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AL360219.1-201ENST00000610230 366 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AL450489.1-201ENST00000612071 468 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AL139418.1-201ENST00000613613 177 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HOXA1P49639 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 AC007490.1-201ENST00000624321 703 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA1P49639 AP003399.1-201ENST00000637534 361 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.08□□□□□ -1.76
HOXA1P49639 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXA1P49639 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXA1P49639 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 EOGT-210ENST00000615922 1931 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXA1P49639 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXA1P49639 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXA1P49639 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXA1P49639 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXA1P49639 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 U3.3-201ENST00000362986 216 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 RN7SKP124-201ENST00000364730 341 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
HOXA1P49639 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXA1P49639 ATP5F1P3-201ENST00000397213 657 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXA1P49639 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC079807.1-201ENST00000429993 481 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 PPIAP13-201ENST00000434706 478 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 UBE2D3P1-201ENST00000436669 444 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 GTF2IP7-202ENST00000436677 309 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC093155.1-201ENST00000440164 826 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 MRPL48P1-201ENST00000445390 636 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXA1P49639 MYO5BP2-201ENST00000449815 1277 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 RPL10P17-201ENST00000453852 316 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 Z92846.1-201ENST00000456203 268 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AL161747.1-201ENST00000480068 358 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC005912.1-201ENST00000495392 255 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC011352.3-201ENST00000505162 593 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA1P49639 RNU6-941P-201ENST00000516346 108 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 Y_RNA.688-201ENST00000516565 95 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXA1P49639 C1GALT1P3-201ENST00000522049 819 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC010306.1-201ENST00000523223 1117 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 MIR4310-201ENST00000582950 57 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 MRPS35P3-201ENST00000603189 709 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AL158042.1-201ENST00000605338 460 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AC018638.7-201ENST00000605836 1114 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 AL353726.1-201ENST00000614041 1000 ntBASIC4.07□□□□□ -1.76
HOXA1P49639 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms