Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.23□□□□□ -1.25
COL9A1P20849 OR5M6P-201ENST00000530227 937 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 CASP1-212ENST00000531166 300 ntTSL 5 BASIC7.23□□□□□ -1.25
COL9A1P20849 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC7.23□□□□□ -1.25
COL9A1P20849 AC090115.3-201ENST00000553218 849 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 AL049839.1-201ENST00000556151 657 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC7.23□□□□□ -1.25
COL9A1P20849 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC7.23□□□□□ -1.25
COL9A1P20849 AC090615.1-201ENST00000577519 154 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 COX6CP3-201ENST00000580869 223 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
COL9A1P20849 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC7.23□□□□□ -1.25
COL9A1P20849 AC010620.2-201ENST00000600135 313 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 RPL23AP92-201ENST00000603609 255 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 U2.17-201ENST00000611454 95 ntBASIC7.23□□□□□ -1.25
COL9A1P20849 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.23□□□□□ -1.25
COL9A1P20849 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC7.23□□□□□ -1.25
COL9A1P20849 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC7.23□□□□□ -1.25
COL9A1P20849 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL9A1P20849 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL9A1P20849 FAM107A-201ENST00000360997 3367 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL9A1P20849 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC7.23□□□□□ -1.25
COL9A1P20849 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL9A1P20849 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC7.23□□□□□ -1.25
COL9A1P20849 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 HSPA8P11-201ENST00000508840 1898 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 Y_RNA.126-201ENST00000363382 111 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 Y_RNA.234-201ENST00000364409 97 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 RNU6-61P-201ENST00000365528 109 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 RNU6-1127P-201ENST00000384580 107 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC7.22□□□□□ -1.25
COL9A1P20849 RPL7P2-201ENST00000427639 268 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 MYL8P-204ENST00000431574 518 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC7.22□□□□□ -1.25
COL9A1P20849 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC7.22□□□□□ -1.25
COL9A1P20849 AL161636.2-201ENST00000445179 927 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 RPL21P8-201ENST00000465083 535 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 RN7SL180P-201ENST00000466769 294 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 DYNLL1P5-201ENST00000467158 270 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 AP003733.2-201ENST00000529409 171 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC7.22□□□□□ -1.25
COL9A1P20849 GNG2-203ENST00000553432 577 ntTSL 4 BASIC7.22□□□□□ -1.25
COL9A1P20849 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 RN7SL404P-201ENST00000582421 281 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 AC015801.1-201ENST00000585651 153 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 GLYATL1P2-202ENST00000588046 902 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 AC025857.2-201ENST00000602711 238 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 AL512662.1-201ENST00000624850 2251 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 CCDC162P-214ENST00000640755 1958 ntTSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 NOTCH2-206ENST00000579475 2954 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
COL9A1P20849 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 GPBP1-208ENST00000514387 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 SALL1P1-201ENST00000438101 3837 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 HPSE2-204ENST00000404542 3681 ntTSL 5 BASIC7.22□□□□□ -1.25
COL9A1P20849 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL9A1P20849 AP003972.1-201ENST00000625192 5446 ntBASIC7.22□□□□□ -1.25
COL9A1P20849 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 NACA-216ENST00000550952 2922 ntTSL 2 BASIC7.21□□□□□ -1.25
COL9A1P20849 AC007938.1-201ENST00000562524 2902 ntBASIC7.21□□□□□ -1.25
COL9A1P20849 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC7.21□□□□□ -1.25
COL9A1P20849 FLG-AS1-202ENST00000392688 2995 ntTSL 2 BASIC7.21□□□□□ -1.25
COL9A1P20849 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.21□□□□□ -1.25
COL9A1P20849 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC7.21□□□□□ -1.25
COL9A1P20849 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.25
COL9A1P20849 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC7.21□□□□□ -1.25
COL9A1P20849 OPRM1-205ENST00000414028 2485 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 AL138713.1-201ENST00000624026 2130 ntBASIC7.21□□□□□ -1.25
COL9A1P20849 OSBPL9-202ENST00000371714 3352 ntAPPRIS ALT1 TSL 2 BASIC7.21□□□□□ -1.25
COL9A1P20849 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL9A1P20849 AC103710.2-202ENST00000641454 2853 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms