Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Y_RNA.333-201ENST00000365274 102 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 SNORA70C-201ENST00000384538 135 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 Y_RNA.578-201ENST00000390903 88 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 RNU2-65P-201ENST00000410162 185 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 RPS3AP25-201ENST00000411660 793 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL449283.1-202ENST00000418249 604 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC114814.2-201ENST00000419195 485 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 HMGB1P45-201ENST00000435986 653 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 MTND1P33-201ENST00000446251 917 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL358232.1-201ENST00000448030 501 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 RN7SL443P-201ENST00000464331 290 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC134050.1-201ENST00000495088 933 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AP001781.1-201ENST00000530977 207 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 MIR4666A-201ENST00000580160 79 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC006130.2-201ENST00000586202 326 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC002487.1-201ENST00000604565 994 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL355816.1-201ENST00000607951 118 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC116447.1-201ENST00000613153 453 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC010975.3-201ENST00000618727 978 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL121895.2-201ENST00000619558 447 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC009229.4-201ENST00000623854 1947 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 LINC01355-201ENST00000566551 5444 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 MIR208A-201ENST00000362287 71 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 RNU1-94P-201ENST00000362627 173 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 SNORD113.2-201ENST00000364166 89 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 RPEP3-201ENST00000425462 676 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC092648.1-201ENST00000425870 423 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AL009174.1-201ENST00000426577 416 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 NPM1P24-201ENST00000428039 894 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 RPL21P110-201ENST00000433345 446 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 HMGB3P6-201ENST00000444896 598 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 VN1R34P-201ENST00000447387 883 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 SLC25A18P1-201ENST00000449385 454 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC007016.1-201ENST00000512110 244 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 MTCO1P49-201ENST00000523429 802 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 MTCO3P15-201ENST00000526563 574 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AGGF1P5-201ENST00000567900 919 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 MIR3158-1-201ENST00000583596 81 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC115085.1-201ENST00000588924 229 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AP005432.2-201ENST00000608162 586 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AL138478.1-201ENST00000612252 832 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 AC108359.1-201ENST00000616451 1211 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 CR392039.4-201ENST00000624968 501 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.66□□□□□ -1.66
COL28A1Q2UY09 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.66□□□□□ -1.66
COL28A1Q2UY09 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms