Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 RNA5SP52-201ENST00000362448 134 ntBASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AL158156.1-201ENST00000422509 473 ntBASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AC087650.1-201ENST00000431445 468 ntBASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 NPM1P29-201ENST00000483112 803 ntBASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AL137843.1-201ENST00000605078 385 ntBASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AC009229.4-201ENST00000623854 1947 ntBASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC093849.1-201ENST00000563631 2209 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 MTND2P15-201ENST00000418575 892 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 RN7SL809P-201ENST00000482040 297 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 RPL23AP94-201ENST00000512518 302 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC119674.1-207ENST00000641355 633 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 GNG5P1-201ENST00000255500 204 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 RNU6-1279P-201ENST00000383917 103 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AL590609.2-201ENST00000421430 368 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 HMGB1P37-201ENST00000439613 609 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 UBDP1-202ENST00000457888 382 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC017015.1-201ENST00000477387 286 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC092354.2-201ENST00000607786 514 ntBASIC4.73□□□□□ -1.65
CCDC88AQ3V6T2 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 RHOT1P2-201ENST00000366423 333 ntBASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 RNU6ATAC39P-201ENST00000516309 149 ntBASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 AC025627.2-201ENST00000576220 160 ntBASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 MAPK10-253ENST00000641010 4072 ntBASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 SMG1P4-204ENST00000523028 4131 ntBASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.72□□□□□ -1.65
CCDC88AQ3V6T2 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.71□□□□□ -1.65
CCDC88AQ3V6T2 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
CCDC88AQ3V6T2 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 HDGFP1-201ENST00000405943 252 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 RN7SL601P-201ENST00000471221 293 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC008802.1-201ENST00000519121 791 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC008011.1-201ENST00000545989 227 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC069240.1-201ENST00000548774 375 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AP000255.1-201ENST00000610276 676 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 NPM1P25-201ENST00000429734 854 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC011742.1-201ENST00000431448 434 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC097462.2-201ENST00000504623 481 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms