Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RPL21P43-201ENST00000425440 472 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 VN1R40P-201ENST00000455196 941 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC011979.1-201ENST00000472300 483 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC068587.1-201ENST00000483613 781 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC026979.1-201ENST00000492525 396 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AK3P4-201ENST00000504283 583 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC008885.2-201ENST00000509506 930 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 ENPP7P9-201ENST00000514456 627 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC138938.1-201ENST00000515431 782 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 SEPT10P1-201ENST00000517342 1162 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC092709.1-201ENST00000521355 1045 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 NDUFB4P11-201ENST00000560510 395 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC107075.1-201ENST00000613695 314 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AP003485.2-201ENST00000623636 610 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 AC068057.2-201ENST00000624047 895 ntBASIC4.94□□□□□ -1.62
HMGB4Q8WW32 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HMGB4Q8WW32 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 HMGB1P5-201ENST00000255320 642 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 PEX12P1-201ENST00000400284 1048 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AL356967.1-201ENST00000406305 431 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 GPS2P1-201ENST00000411761 986 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AL049737.1-201ENST00000413920 1403 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC104306.1-201ENST00000449702 371 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 DYNLL1P6-201ENST00000503440 264 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC119751.5-201ENST00000514077 770 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 SNORA70.11-201ENST00000515987 138 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 SNORA70.13-201ENST00000516116 138 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AP001317.1-201ENST00000531194 960 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC009643.1-201ENST00000532030 391 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 MRPS36P5-201ENST00000551909 298 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC009094.1-201ENST00000564443 426 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 RN7SL290P-201ENST00000578661 300 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC093765.1-201ENST00000603758 881 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC069545.1-201ENST00000605671 358 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 FAM27B-201ENST00000610601 213 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 NCLP2-201ENST00000416078 1462 ntBASIC4.93□□□□□ -1.62
HMGB4Q8WW32 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
HMGB4Q8WW32 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
HMGB4Q8WW32 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
HMGB4Q8WW32 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HMGB4Q8WW32 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
HMGB4Q8WW32 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HMGB4Q8WW32 AC093849.1-201ENST00000563631 2209 ntBASIC4.92□□□□□ -1.62
HMGB4Q8WW32 AP000756.2-201ENST00000624168 2567 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms