Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.05□□□□□ -1.76
CLDN9O95484 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.05□□□□□ -1.76
CLDN9O95484 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CLDN9O95484 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.05□□□□□ -1.76
CLDN9O95484 DDX6P1-205ENST00000441966 1436 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.04□□□□□ -1.76
CLDN9O95484 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.04□□□□□ -1.76
CLDN9O95484 SNORD74.4-201ENST00000364129 80 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 SNORA62.2-201ENST00000364672 152 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 RNU6-452P-201ENST00000384406 107 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CLDN9O95484 LAP3P1-201ENST00000403648 294 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AP000357.1-201ENST00000409926 1165 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC011933.1-201ENST00000413334 321 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC245028.1-201ENST00000423259 256 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 C4BPAP2-201ENST00000428434 478 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AL031663.1-201ENST00000437445 219 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC069285.2-201ENST00000440210 275 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC116533.1-201ENST00000459748 321 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 NDUFA5P9-201ENST00000472609 340 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC011037.1-201ENST00000483964 558 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC013356.1-201ENST00000489027 564 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC025554.1-201ENST00000505641 188 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 MTCO1P31-201ENST00000506355 492 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC008958.1-201ENST00000511047 682 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.04□□□□□ -1.76
CLDN9O95484 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLDN9O95484 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.04□□□□□ -1.76
CLDN9O95484 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC245389.2-201ENST00000616023 576 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC242843.1-201ENST00000618702 573 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC104820.1-201ENST00000624183 307 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.04□□□□□ -1.76
CLDN9O95484 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.04□□□□□ -1.76
CLDN9O95484 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
CLDN9O95484 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLDN9O95484 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLDN9O95484 Z82217.1-201ENST00000625157 8149 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 AC012020.1-201ENST00000624541 1728 ntBASIC4.04□□□□□ -1.76
CLDN9O95484 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CLDN9O95484 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.03□□□□□ -1.76
CLDN9O95484 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 AC139713.2-214ENST00000642059 1811 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.03□□□□□ -1.76
CLDN9O95484 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CLDN9O95484 RNU6-984P-201ENST00000363236 109 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 HSPD1P16-201ENST00000402302 394 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 AL160175.1-201ENST00000428124 247 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 RPS3AP54-201ENST00000435535 734 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 CBX1P4-201ENST00000439415 457 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 AC010469.1-201ENST00000463864 576 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 AC109327.1-201ENST00000471666 403 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.03□□□□□ -1.76
CLDN9O95484 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLDN9O95484 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 TVP23BP1-201ENST00000557500 617 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.03□□□□□ -1.76
CLDN9O95484 AC012603.1-201ENST00000606424 528 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 AL121873.1-201ENST00000616013 524 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 CFTRP2-201ENST00000634304 199 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CLDN9O95484 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CLDN9O95484 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.03□□□□□ -1.76
CLDN9O95484 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CLDN9O95484 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
CLDN9O95484 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CLDN9O95484 AL356489.2-201ENST00000566968 3528 ntBASIC4.03□□□□□ -1.76
CLDN9O95484 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CLDN9O95484 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
CLDN9O95484 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 AL049555.1-201ENST00000562834 1933 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 RNU4-39P-201ENST00000362455 127 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 RNU1-132P-201ENST00000364300 164 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms