Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AL031985.3-201ENST00000565390 2449 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 OR10J6P-201ENST00000289731 930 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 RNA5SP131-201ENST00000365452 119 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 RNU1-149P-201ENST00000390870 161 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 SNRPEP2-201ENST00000397592 279 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AL031736.2-201ENST00000426573 787 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 Z74696.2-201ENST00000436514 498 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 UBE2V1P3-201ENST00000439651 417 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AL450996.1-201ENST00000445574 1202 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 SNRPFP4-201ENST00000456366 242 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC092757.1-201ENST00000467293 467 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 GAPDHP62-201ENST00000515313 990 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 BNIP3P11-201ENST00000603878 563 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC073968.1-201ENST00000618594 637 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC012414.7-202ENST00000622705 1090 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 AC027228.2-201ENST00000567141 2154 ntBASIC5.62□□□□□ -1.51
TRIM39Q9HCM9 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 RN7SKP69-201ENST00000365390 305 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 RNA5SP30-201ENST00000365552 115 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AL590763.1-201ENST00000398297 1545 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 ADAM24P-201ENST00000398655 2101 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AL512430.2-201ENST00000406786 339 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 RN7SKP279-201ENST00000411383 298 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 RN7SKP293-201ENST00000411389 296 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 RPL21P32-201ENST00000419877 477 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 SNRPEP7-201ENST00000438350 220 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 KRT8P51-201ENST00000438938 274 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 CYCSP51-201ENST00000443545 318 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 EPS15P1-201ENST00000448836 336 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 FAM172BP-201ENST00000487497 1089 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 RN7SL284P-201ENST00000498823 275 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 DUXAP2-201ENST00000519198 589 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC027026.1-201ENST00000532323 742 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC068587.4-201ENST00000533893 186 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms