Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC022819.1-201ENST00000563495 3910 ntBASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
NPAS3Q8IXF0 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AL133243.4-201ENST00000623116 3109 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 RNU6-200P-201ENST00000364743 107 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 RNU6-432P-201ENST00000384196 109 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 MIR640-201ENST00000385086 96 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 SOD2P1-201ENST00000396543 562 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 MIR1252-201ENST00000408861 65 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC243428.1-201ENST00000421099 264 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 Z68868.1-201ENST00000429048 544 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AL132765.1-201ENST00000434165 553 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC094019.1-201ENST00000434678 472 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 RPL21P23-201ENST00000446654 460 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 SBDSP1-204ENST00000453858 737 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC068228.1-201ENST00000461723 211 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 SNX18P24-201ENST00000505249 671 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC095057.1-201ENST00000507583 168 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC025465.3-201ENST00000510570 311 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 RN7SKP24-201ENST00000515888 284 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 RN7SKP35-201ENST00000517210 151 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 IGKV3D-34-201ENST00000522638 302 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC104695.3-201ENST00000604052 296 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC073046.2-201ENST00000604756 527 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 MIR6729-201ENST00000618194 65 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AL354718.1-201ENST00000619764 589 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC011592.1-201ENST00000624647 3634 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 AC006378.2-201ENST00000623178 2476 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 LINC01616-201ENST00000561816 2280 ntBASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
NPAS3Q8IXF0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 RNU6-450P-201ENST00000364654 107 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 Y_RNA.270-201ENST00000364693 104 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 RNY1P14-201ENST00000384426 108 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 SNORD37.1-201ENST00000390968 65 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 NENFP1-201ENST00000419476 466 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 DUTP4-201ENST00000424782 475 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC073335.1-201ENST00000427776 363 ntBASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms