Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC3.8□□□□□ -1.8
COL5A1P20908 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.8□□□□□ -1.8
COL5A1P20908 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC3.8□□□□□ -1.8
COL5A1P20908 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.8□□□□□ -1.8
COL5A1P20908 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.8□□□□□ -1.8
COL5A1P20908 AC025627.2-201ENST00000576220 160 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 AL137843.1-201ENST00000605078 385 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 AC090246.1-201ENST00000616499 426 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 AC020633.1-201ENST00000468439 2247 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
COL5A1P20908 OSBPL9P1-201ENST00000604744 1469 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
COL5A1P20908 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A1P20908 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A1P20908 HDGFP1-201ENST00000405943 252 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 SNORA3.3-201ENST00000408712 125 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.79□□□□□ -1.8
COL5A1P20908 NPM1P25-201ENST00000429734 854 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AC011742.1-201ENST00000431448 434 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AC106707.2-201ENST00000484182 374 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC3.79□□□□□ -1.8
COL5A1P20908 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.79□□□□□ -1.8
COL5A1P20908 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A1P20908 SETP1-201ENST00000556014 845 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 GTF2IP8-201ENST00000560687 584 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.79□□□□□ -1.8
COL5A1P20908 RNU1-30P-201ENST00000606575 163 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 MIR7975-201ENST00000619350 68 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A1P20908 AC083843.3-201ENST00000623679 2186 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.79□□□□□ -1.8
COL5A1P20908 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A1P20908 HCFC2P1-201ENST00000392864 1592 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A1P20908 MARK2P15-201ENST00000432204 2186 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 GSTM3P2-201ENST00000412746 530 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC3.79□□□□□ -1.8
COL5A1P20908 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.79□□□□□ -1.8
COL5A1P20908 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.79□□□□□ -1.8
COL5A1P20908 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.79□□□□□ -1.8
COL5A1P20908 AC093853.1-201ENST00000515689 483 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 RNA5SP164-201ENST00000516533 110 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.79□□□□□ -1.8
COL5A1P20908 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.79□□□□□ -1.8
COL5A1P20908 AL031985.2-201ENST00000600955 480 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AL451044.1-201ENST00000604867 238 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AC016590.3-201ENST00000611171 753 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 AC243654.2-201ENST00000612843 443 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 MIR6852-201ENST00000621699 66 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 AP002001.2-201ENST00000529025 1469 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A1P20908 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
COL5A1P20908 AL035425.3-201ENST00000564206 4996 ntBASIC3.79□□□□□ -1.8
COL5A1P20908 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A1P20908 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.78□□□□□ -1.8
COL5A1P20908 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A1P20908 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
COL5A1P20908 AC019072.1-201ENST00000604535 1551 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A1P20908 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC3.78□□□□□ -1.8
COL5A1P20908 MAPK10-253ENST00000641010 4072 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A1P20908 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A1P20908 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A1P20908 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A1P20908 AL390879.2-203ENST00000426943 1121 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 HIGD1AP4-201ENST00000430194 280 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 AL591363.1-201ENST00000450091 483 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A1P20908 WBP1LP4-201ENST00000505043 344 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.78□□□□□ -1.8
COL5A1P20908 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A1P20908 AC095038.2-201ENST00000621464 1070 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.78□□□□□ -1.8
COL5A1P20908 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL5A1P20908 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC3.78□□□□□ -1.8
COL5A1P20908 Z82217.1-201ENST00000625157 8149 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
COL5A1P20908 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
COL5A1P20908 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.78□□□□□ -1.8
COL5A1P20908 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A1P20908 AC009229.4-201ENST00000623854 1947 ntBASIC3.78□□□□□ -1.8
COL5A1P20908 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.78□□□□□ -1.81
COL5A1P20908 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
COL5A1P20908 RNA5SP52-201ENST00000362448 134 ntBASIC3.77□□□□□ -1.81
COL5A1P20908 RHOT1P2-201ENST00000366423 333 ntBASIC3.77□□□□□ -1.81
COL5A1P20908 Y_RNA.500-201ENST00000384466 111 ntBASIC3.77□□□□□ -1.81
COL5A1P20908 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL5A1P20908 RN7SKP199-201ENST00000410325 305 ntBASIC3.77□□□□□ -1.81
COL5A1P20908 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms