Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL606490.9-201ENST00000603331 271 ntBASIC4.49□□□□□ -1.69
MSH4O15457 AL592436.1-201ENST00000605135 558 ntBASIC4.49□□□□□ -1.69
MSH4O15457 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.49□□□□□ -1.69
MSH4O15457 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSH4O15457 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSH4O15457 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.49□□□□□ -1.69
MSH4O15457 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.49□□□□□ -1.69
MSH4O15457 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 RNU6-213P-201ENST00000384051 104 ntBASIC4.48□□□□□ -1.69
MSH4O15457 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH4O15457 RPL23AP4-201ENST00000427757 463 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH4O15457 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.48□□□□□ -1.69
MSH4O15457 AC093716.1-201ENST00000435923 377 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.48□□□□□ -1.69
MSH4O15457 AC067904.2-201ENST00000517322 1283 ntBASIC4.48□□□□□ -1.69
MSH4O15457 OR4V1P-201ENST00000525394 1140 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH4O15457 AC087888.1-201ENST00000550884 1254 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.48□□□□□ -1.69
MSH4O15457 AC022916.3-201ENST00000592961 742 ntBASIC4.48□□□□□ -1.69
MSH4O15457 BMS1P7-201ENST00000602440 1052 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AC012603.1-201ENST00000606424 528 ntBASIC4.48□□□□□ -1.69
MSH4O15457 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.48□□□□□ -1.69
MSH4O15457 AL353600.1-201ENST00000608148 251 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AC099676.1-201ENST00000608886 657 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AC124312.6-202ENST00000623624 418 ntBASIC4.48□□□□□ -1.69
MSH4O15457 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH4O15457 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH4O15457 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.48□□□□□ -1.69
MSH4O15457 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
MSH4O15457 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSH4O15457 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
MSH4O15457 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.47□□□□□ -1.69
MSH4O15457 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
MSH4O15457 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
MSH4O15457 MIR513A2-201ENST00000385249 127 ntBASIC4.47□□□□□ -1.69
MSH4O15457 MT-TP-201ENST00000387461 68 ntBASIC4.47□□□□□ -1.69
MSH4O15457 SNORA11-201ENST00000408789 128 ntBASIC4.47□□□□□ -1.69
MSH4O15457 SNORA3C-201ENST00000408792 125 ntBASIC4.47□□□□□ -1.69
MSH4O15457 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH4O15457 AC022022.1-201ENST00000430304 178 ntBASIC4.47□□□□□ -1.69
MSH4O15457 TMX2P1-201ENST00000436507 708 ntBASIC4.47□□□□□ -1.69
MSH4O15457 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH4O15457 NPM1P39-201ENST00000449818 867 ntBASIC4.47□□□□□ -1.69
MSH4O15457 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH4O15457 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.47□□□□□ -1.69
MSH4O15457 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.47□□□□□ -1.69
MSH4O15457 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH4O15457 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.47□□□□□ -1.69
MSH4O15457 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.47□□□□□ -1.69
MSH4O15457 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.47□□□□□ -1.69
MSH4O15457 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.47□□□□□ -1.69
MSH4O15457 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH4O15457 AC069240.1-201ENST00000548774 375 ntBASIC4.47□□□□□ -1.69
MSH4O15457 AC092868.3-201ENST00000560515 784 ntBASIC4.47□□□□□ -1.69
MSH4O15457 BNIP3P5-201ENST00000562290 498 ntBASIC4.47□□□□□ -1.69
MSH4O15457 AC106785.1-201ENST00000565935 262 ntBASIC4.47□□□□□ -1.69
MSH4O15457 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH4O15457 AC233280.2-201ENST00000603917 1070 ntBASIC4.47□□□□□ -1.69
MSH4O15457 AC092159.4-201ENST00000624944 550 ntBASIC4.47□□□□□ -1.69
MSH4O15457 CDRT1-208ENST00000630868 794 ntBASIC4.47□□□□□ -1.69
MSH4O15457 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
MSH4O15457 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH4O15457 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH4O15457 AC016588.2-201ENST00000632484 3021 ntBASIC4.47□□□□□ -1.69
MSH4O15457 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.47□□□□□ -1.69
MSH4O15457 AC110792.3-201ENST00000595906 1614 ntBASIC4.46□□□□□ -1.69
MSH4O15457 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
MSH4O15457 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
MSH4O15457 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSH4O15457 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.46□□□□□ -1.69
MSH4O15457 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSH4O15457 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
MSH4O15457 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH4O15457 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH4O15457 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.46□□□□□ -1.7
MSH4O15457 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH4O15457 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH4O15457 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH4O15457 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
MSH4O15457 MIR1251-201ENST00000408552 70 ntBASIC4.46□□□□□ -1.7
MSH4O15457 CYCSP10-201ENST00000417973 294 ntBASIC4.46□□□□□ -1.7
MSH4O15457 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.46□□□□□ -1.7
MSH4O15457 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.46□□□□□ -1.7
MSH4O15457 HIGD1AP4-201ENST00000430194 280 ntBASIC4.46□□□□□ -1.7
MSH4O15457 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH4O15457 AP000936.3-201ENST00000438127 255 ntBASIC4.46□□□□□ -1.7
MSH4O15457 AC083863.1-201ENST00000438811 231 ntBASIC4.46□□□□□ -1.7
MSH4O15457 AL606490.8-201ENST00000441624 319 ntBASIC4.46□□□□□ -1.7
MSH4O15457 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH4O15457 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH4O15457 EIF2S2P4-201ENST00000461070 984 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 204.7 ms