Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC010476.1-201ENST00000519111 851 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 DEFB109D-201ENST00000529497 240 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 GLRXP2-201ENST00000555594 321 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 HMGB2P1-201ENST00000591146 634 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC010680.3-201ENST00000604215 520 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC020634.1-201ENST00000608701 549 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 MIR6715B-201ENST00000637172 77 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC017104.4-201ENST00000636283 1592 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 AC007529.1-201ENST00000418574 2178 ntBASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HDDC3Q8N4P3 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 MAPK10-349ENST00000641767 3661 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 ATP5F1P2-201ENST00000398143 760 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 TAF9BP2-201ENST00000400856 499 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 CEACAMP8-201ENST00000413902 580 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 RPL36AP36-201ENST00000418616 301 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 RPL36AP10-201ENST00000421785 322 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AL451062.2-201ENST00000427515 271 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 CEACAMP1-201ENST00000434624 1035 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 RPL7P29-201ENST00000437151 728 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC022034.3-201ENST00000471393 478 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 FTH1P24-201ENST00000503502 462 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 CYCSP29-201ENST00000533731 318 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 CKS1BP1-201ENST00000555221 240 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AL161713.1-201ENST00000555538 145 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC245389.1-201ENST00000605141 529 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC012467.1-201ENST00000607740 256 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AL355852.1-201ENST00000454081 1771 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC022893.2-201ENST00000564832 3296 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 SALL4P2-201ENST00000423288 2910 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC090229.1-201ENST00000590983 1609 ntBASIC4.54□□□□□ -1.68
HDDC3Q8N4P3 AC005261.4-201ENST00000600047 1385 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 ZNF90P1-201ENST00000480493 1951 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 RNU2-17P-201ENST00000410290 190 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 RPL23AP26-201ENST00000412728 464 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 SNRPFP1-201ENST00000414761 252 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 LINC01347-201ENST00000417964 355 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AL389915.1-201ENST00000422463 466 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 RWDD4P2-201ENST00000426392 563 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AC006326.1-201ENST00000445465 787 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 PHBP16-201ENST00000446318 950 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AC092685.1-201ENST00000447960 1243 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 MTND2P25-201ENST00000449028 610 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 CABYRP1-201ENST00000465493 1045 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 RWDD4P1-201ENST00000488019 565 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AC113430.1-201ENST00000506872 718 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AC020593.1-201ENST00000507399 299 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 MTND4LP31-201ENST00000514859 294 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 RN7SKP46-201ENST00000515942 234 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.53□□□□□ -1.68
HDDC3Q8N4P3 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms