Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC087283.1-201ENST00000604029 1074 ntBASIC6.26□□□□□ -1.41
SOX4Q06945 Z95327.3-201ENST00000610385 572 ntBASIC6.26□□□□□ -1.41
SOX4Q06945 AC243756.2-201ENST00000618406 463 ntBASIC6.26□□□□□ -1.41
SOX4Q06945 AC110994.2-201ENST00000635481 492 ntBASIC6.26□□□□□ -1.41
SOX4Q06945 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SOX4Q06945 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SOX4Q06945 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.26□□□□□ -1.41
SOX4Q06945 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
SOX4Q06945 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX4Q06945 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.26□□□□□ -1.41
SOX4Q06945 FARSBP1-201ENST00000435808 1778 ntBASIC6.26□□□□□ -1.41
SOX4Q06945 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC6.26□□□□□ -1.41
SOX4Q06945 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SOX4Q06945 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.26□□□□□ -1.41
SOX4Q06945 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
SOX4Q06945 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
SOX4Q06945 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 MRE11P1-201ENST00000464884 2127 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SOX4Q06945 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX4Q06945 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 AL159987.1-201ENST00000347911 293 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 Y_RNA.86-201ENST00000363020 111 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 RNU6-878P-201ENST00000384578 110 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SOX4Q06945 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SOX4Q06945 SNRPEP2-201ENST00000397592 279 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 SDHDP6-201ENST00000414693 480 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 HMGB3P20-201ENST00000417997 600 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 RPL34P3-201ENST00000421454 338 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX4Q06945 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX4Q06945 AC002504.1-201ENST00000438281 691 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AL590365.1-201ENST00000450788 243 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 TRBV8-2-201ENST00000475637 270 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 RPL7P42-201ENST00000481005 679 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 RPL32P33-201ENST00000487023 394 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC6.25□□□□□ -1.41
SOX4Q06945 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX4Q06945 MTND5P4-201ENST00000514978 288 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 RFPL4AP3-201ENST00000515267 345 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 SCARNA6.1-201ENST00000516989 238 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 SNORA43.3-201ENST00000517240 103 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX4Q06945 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AL049779.3-201ENST00000557141 606 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC090515.3-201ENST00000560431 315 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AL157394.1-201ENST00000562983 1224 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC015917.1-201ENST00000579654 510 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC6.25□□□□□ -1.41
SOX4Q06945 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC6.25□□□□□ -1.41
SOX4Q06945 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 AL360085.1-201ENST00000604713 532 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AC104010.1-201ENST00000616889 150 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC6.25□□□□□ -1.41
SOX4Q06945 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SOX4Q06945 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
SOX4Q06945 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
SOX4Q06945 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 CASC19-260ENST00000641828 2001 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 CCT4P2-201ENST00000233836 1548 ntBASIC6.25□□□□□ -1.41
SOX4Q06945 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SOX4Q06945 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX4Q06945 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.24□□□□□ -1.41
SOX4Q06945 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SOX4Q06945 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
SOX4Q06945 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SOX4Q06945 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.24□□□□□ -1.41
SOX4Q06945 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC6.24□□□□□ -1.41
SOX4Q06945 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX4Q06945 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX4Q06945 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX4Q06945 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
SOX4Q06945 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SOX4Q06945 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.24□□□□□ -1.41
SOX4Q06945 SYF2-202ENST00000354361 926 ntTSL 2 BASIC6.24□□□□□ -1.41
SOX4Q06945 MIR323A-201ENST00000362199 86 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 RNA5SP46-201ENST00000362370 120 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 SUGT1P1-201ENST00000379514 476 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 RNU6-1103P-201ENST00000384150 107 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 U3.25-201ENST00000391209 220 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 TMSB4XP8-201ENST00000402089 135 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 RN7SKP229-201ENST00000410465 302 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 TMSB4XP6-201ENST00000415187 135 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC6.24□□□□□ -1.41
SOX4Q06945 AC004690.1-201ENST00000418216 328 ntBASIC6.24□□□□□ -1.41
SOX4Q06945 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms