Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL18A1P39060 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC4.95□□□□□ -1.62
COL18A1P39060 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL18A1P39060 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC4.95□□□□□ -1.62
COL18A1P39060 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC4.95□□□□□ -1.62
COL18A1P39060 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL18A1P39060 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
COL18A1P39060 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.95□□□□□ -1.62
COL18A1P39060 CYCSP35-201ENST00000451978 304 ntBASIC4.95□□□□□ -1.62
COL18A1P39060 AC005008.1-201ENST00000456151 612 ntBASIC4.95□□□□□ -1.62
COL18A1P39060 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
COL18A1P39060 AC069240.1-201ENST00000548774 375 ntBASIC4.95□□□□□ -1.62
COL18A1P39060 AC011816.2-201ENST00000607089 556 ntBASIC4.95□□□□□ -1.62
COL18A1P39060 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.95□□□□□ -1.62
COL18A1P39060 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC4.95□□□□□ -1.62
COL18A1P39060 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
COL18A1P39060 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC4.94□□□□□ -1.62
COL18A1P39060 AC009229.4-201ENST00000623854 1947 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 AP000641.1-201ENST00000531988 1639 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 AC245054.1-201ENST00000420944 258 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 SETD6P1-201ENST00000444575 317 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.94□□□□□ -1.62
COL18A1P39060 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.94□□□□□ -1.62
COL18A1P39060 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.94□□□□□ -1.62
COL18A1P39060 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.94□□□□□ -1.62
COL18A1P39060 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.94□□□□□ -1.62
COL18A1P39060 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.94□□□□□ -1.62
COL18A1P39060 AC006077.1-201ENST00000604746 343 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 AL591424.2-201ENST00000617023 128 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.94□□□□□ -1.62
COL18A1P39060 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.94□□□□□ -1.62
COL18A1P39060 AP000553.6-201ENST00000641242 118 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 AC063923.1-201ENST00000478982 1619 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
COL18A1P39060 MAPK10-253ENST00000641010 4072 ntBASIC4.94□□□□□ -1.62
COL18A1P39060 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL18A1P39060 RNU4-35P-201ENST00000362588 141 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.93□□□□□ -1.62
COL18A1P39060 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.93□□□□□ -1.62
COL18A1P39060 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.93□□□□□ -1.62
COL18A1P39060 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.93□□□□□ -1.62
COL18A1P39060 GNRHR2P1-201ENST00000555315 631 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 AC007066.2-202ENST00000566531 914 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL18A1P39060 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL18A1P39060 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.93□□□□□ -1.62
COL18A1P39060 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL18A1P39060 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL18A1P39060 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL18A1P39060 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC4.93□□□□□ -1.62
COL18A1P39060 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL18A1P39060 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL18A1P39060 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.93□□□□□ -1.62
COL18A1P39060 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL18A1P39060 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL18A1P39060 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.93□□□□□ -1.62
COL18A1P39060 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.93□□□□□ -1.62
COL18A1P39060 AC010740.1-201ENST00000417035 684 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 AL391219.1-201ENST00000422570 483 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.93□□□□□ -1.62
COL18A1P39060 AC108941.1-201ENST00000502853 530 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.93□□□□□ -1.62
COL18A1P39060 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.93□□□□□ -1.62
COL18A1P39060 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.93□□□□□ -1.62
COL18A1P39060 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.93□□□□□ -1.62
COL18A1P39060 MIR3124-201ENST00000582636 67 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 AL390816.3-201ENST00000604527 1066 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 AP000255.1-201ENST00000610276 676 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.93□□□□□ -1.62
COL18A1P39060 AL139089.1-201ENST00000620372 975 ntBASIC4.93□□□□□ -1.62
COL18A1P39060 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
COL18A1P39060 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.93□□□□□ -1.62
COL18A1P39060 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.92□□□□□ -1.62
COL18A1P39060 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL18A1P39060 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL18A1P39060 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL18A1P39060 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.92□□□□□ -1.62
COL18A1P39060 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL18A1P39060 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL18A1P39060 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL18A1P39060 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.92□□□□□ -1.62
COL18A1P39060 RNA5SP120-201ENST00000410900 112 ntBASIC4.92□□□□□ -1.62
COL18A1P39060 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.92□□□□□ -1.62
COL18A1P39060 AC073063.1-201ENST00000434352 607 ntBASIC4.92□□□□□ -1.62
COL18A1P39060 AC005019.1-201ENST00000436455 431 ntBASIC4.92□□□□□ -1.62
COL18A1P39060 SNORD105B-201ENST00000458770 79 ntBASIC4.92□□□□□ -1.62
COL18A1P39060 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.92□□□□□ -1.62
COL18A1P39060 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.92□□□□□ -1.62
COL18A1P39060 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.92□□□□□ -1.62
COL18A1P39060 AC009852.2-201ENST00000567898 485 ntBASIC4.92□□□□□ -1.62
COL18A1P39060 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms