Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 A2MP1-204ENST00000566278 4130 ntBASIC4.56□□□□□ -1.68
COL4A1P02462 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.56□□□□□ -1.68
COL4A1P02462 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A1P02462 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A1P02462 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A1P02462 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.55□□□□□ -1.68
COL4A1P02462 USP8P1-201ENST00000494673 3183 ntBASIC4.55□□□□□ -1.68
COL4A1P02462 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.55□□□□□ -1.68
COL4A1P02462 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 RNU1-33P-201ENST00000364249 162 ntBASIC4.55□□□□□ -1.68
COL4A1P02462 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.55□□□□□ -1.68
COL4A1P02462 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 OR4A2P-201ENST00000527276 913 ntBASIC4.55□□□□□ -1.68
COL4A1P02462 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.55□□□□□ -1.68
COL4A1P02462 AC023161.2-201ENST00000551218 780 ntBASIC4.55□□□□□ -1.68
COL4A1P02462 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.55□□□□□ -1.68
COL4A1P02462 AL031985.2-201ENST00000600955 480 ntBASIC4.55□□□□□ -1.68
COL4A1P02462 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.55□□□□□ -1.68
COL4A1P02462 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
COL4A1P02462 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.55□□□□□ -1.68
COL4A1P02462 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A1P02462 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A1P02462 RNU4-35P-201ENST00000362588 141 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 RNU2-65P-201ENST00000410162 185 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 AC017037.1-201ENST00000508460 471 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A1P02462 AC068993.1-201ENST00000546724 589 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A1P02462 AF131215.7-201ENST00000602443 707 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL4A1P02462 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A1P02462 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A1P02462 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 MIR34B-201ENST00000385076 84 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 AC096664.2-201ENST00000411843 406 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 OR51A6P-201ENST00000418680 1004 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A1P02462 KCTD9P3-201ENST00000434597 1169 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 SCARNA13-201ENST00000516672 275 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.54□□□□□ -1.68
COL4A1P02462 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A1P02462 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.54□□□□□ -1.68
COL4A1P02462 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A1P02462 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A1P02462 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A1P02462 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A1P02462 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.54□□□□□ -1.68
COL4A1P02462 ELOCP35-201ENST00000604289 336 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 AC015722.2-201ENST00000622210 551 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 AP000553.6-201ENST00000641242 118 ntBASIC4.54□□□□□ -1.68
COL4A1P02462 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
COL4A1P02462 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A1P02462 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A1P02462 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A1P02462 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A1P02462 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A1P02462 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A1P02462 MIR513A2-201ENST00000385249 127 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A1P02462 HSFY4P-201ENST00000415994 1181 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 AC245054.1-201ENST00000420944 258 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 HMGN1P11-201ENST00000508668 303 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A1P02462 RANP9-201ENST00000519957 271 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A1P02462 UBTFL9-201ENST00000534504 1148 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A1P02462 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A1P02462 ZNF415P1-201ENST00000582279 1166 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A1P02462 AL353600.1-201ENST00000608148 251 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 MIR8058-201ENST00000615737 89 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A1P02462 ATE1-AS1-202ENST00000636460 506 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A1P02462 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL4A1P02462 AL138820.1-201ENST00000617901 5305 ntBASIC4.53□□□□□ -1.68
COL4A1P02462 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
COL4A1P02462 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
COL4A1P02462 CDY11P-201ENST00000447168 1651 ntBASIC4.53□□□□□ -1.69
COL4A1P02462 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A1P02462 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A1P02462 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms