Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC3O75056 RNU6-452P-201ENST00000384406 107 ntBASIC4.31□□□□□ -1.72
SDC3O75056 SNORA48.7-201ENST00000391302 135 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AL121834.1-202ENST00000404494 277 ntBASIC4.31□□□□□ -1.72
SDC3O75056 RNU6-628P-201ENST00000410675 107 ntBASIC4.31□□□□□ -1.72
SDC3O75056 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 AC073069.1-201ENST00000428657 441 ntBASIC4.31□□□□□ -1.72
SDC3O75056 MTND4LP7-201ENST00000431728 294 ntBASIC4.31□□□□□ -1.72
SDC3O75056 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AL031663.1-201ENST00000437445 219 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 TDGF1P1-201ENST00000445734 527 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AC005008.1-201ENST00000456151 612 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 SLC25A15P5-201ENST00000508033 253 ntBASIC4.31□□□□□ -1.72
SDC3O75056 STMN1P2-201ENST00000508435 439 ntBASIC4.31□□□□□ -1.72
SDC3O75056 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 HMGB3P13-201ENST00000511263 607 ntBASIC4.31□□□□□ -1.72
SDC3O75056 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC3O75056 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC3O75056 GLRXP2-201ENST00000555594 321 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.31□□□□□ -1.72
SDC3O75056 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC3O75056 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC3O75056 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 BPIFA4P-203ENST00000603168 689 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AC007423.1-201ENST00000605009 627 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AC025016.1-201ENST00000616746 682 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AP004607.9-201ENST00000618202 316 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AC090506.2-201ENST00000624521 419 ntBASIC4.31□□□□□ -1.72
SDC3O75056 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC3O75056 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC3O75056 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC3O75056 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC3O75056 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.3□□□□□ -1.72
SDC3O75056 AC009501.3-201ENST00000605001 1352 ntBASIC4.3□□□□□ -1.72
SDC3O75056 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 ASNSP1-204ENST00000641977 1664 ntBASIC4.3□□□□□ -1.72
SDC3O75056 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SDC3O75056 MIR372-201ENST00000362225 67 ntBASIC4.3□□□□□ -1.72
SDC3O75056 RNU4-31P-201ENST00000384211 141 ntBASIC4.3□□□□□ -1.72
SDC3O75056 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SDC3O75056 AL161909.1-201ENST00000397390 712 ntBASIC4.3□□□□□ -1.72
SDC3O75056 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
SDC3O75056 FCF1P5-201ENST00000406490 482 ntBASIC4.3□□□□□ -1.72
SDC3O75056 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.3□□□□□ -1.72
SDC3O75056 MTATP6P19-201ENST00000413797 659 ntBASIC4.3□□□□□ -1.72
SDC3O75056 MFSD13B-201ENST00000420133 1290 ntBASIC4.3□□□□□ -1.72
SDC3O75056 MTND4P24-201ENST00000424002 397 ntBASIC4.3□□□□□ -1.72
SDC3O75056 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.3□□□□□ -1.72
SDC3O75056 MTCO1P52-201ENST00000433928 531 ntBASIC4.3□□□□□ -1.72
SDC3O75056 PPIAP13-201ENST00000434706 478 ntBASIC4.3□□□□□ -1.72
SDC3O75056 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.3□□□□□ -1.72
SDC3O75056 RPL34P26-201ENST00000445636 354 ntBASIC4.3□□□□□ -1.72
SDC3O75056 EEF1A1P1-201ENST00000447052 739 ntBASIC4.3□□□□□ -1.72
SDC3O75056 AL359073.1-201ENST00000448036 403 ntBASIC4.3□□□□□ -1.72
SDC3O75056 HMGB1P5-202ENST00000451497 985 ntBASIC4.3□□□□□ -1.72
SDC3O75056 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.3□□□□□ -1.72
SDC3O75056 AC006511.1-201ENST00000470614 315 ntBASIC4.3□□□□□ -1.72
SDC3O75056 DEFB109F-201ENST00000491870 277 ntBASIC4.3□□□□□ -1.72
SDC3O75056 OR9N1P-202ENST00000494289 481 ntBASIC4.3□□□□□ -1.72
SDC3O75056 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.3□□□□□ -1.72
SDC3O75056 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.3□□□□□ -1.72
SDC3O75056 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.3□□□□□ -1.72
SDC3O75056 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.3□□□□□ -1.72
SDC3O75056 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.3□□□□□ -1.72
SDC3O75056 AC079587.1-201ENST00000603846 277 ntBASIC4.3□□□□□ -1.72
SDC3O75056 AC110792.4-201ENST00000609843 298 ntBASIC4.3□□□□□ -1.72
SDC3O75056 AL392048.1-201ENST00000613946 534 ntBASIC4.3□□□□□ -1.72
SDC3O75056 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
SDC3O75056 AC009318.3-201ENST00000616916 503 ntBASIC4.3□□□□□ -1.72
SDC3O75056 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 MIR6891-201ENST00000618788 93 ntBASIC4.3□□□□□ -1.72
SDC3O75056 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.3□□□□□ -1.72
SDC3O75056 AC091948.2-201ENST00000636510 279 ntBASIC4.3□□□□□ -1.72
SDC3O75056 AL163152.1-201ENST00000642001 374 ntBASIC4.3□□□□□ -1.72
SDC3O75056 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.3□□□□□ -1.72
SDC3O75056 NXPH1-205ENST00000602349 1953 ntBASIC4.3□□□□□ -1.72
SDC3O75056 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC3O75056 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.3□□□□□ -1.72
SDC3O75056 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
SDC3O75056 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.3□□□□□ -1.72
SDC3O75056 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SDC3O75056 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms