Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.72■■□□□ 1.07
VTA1Q9NP79 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.72■■□□□ 1.07
VTA1Q9NP79 HOMER2P1-201ENST00000455653 964 ntBASIC21.72■■□□□ 1.07
VTA1Q9NP79 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VTA1Q9NP79 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VTA1Q9NP79 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VTA1Q9NP79 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VTA1Q9NP79 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VTA1Q9NP79 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VTA1Q9NP79 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.71■■□□□ 1.07
VTA1Q9NP79 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
VTA1Q9NP79 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
VTA1Q9NP79 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.7■■□□□ 1.07
VTA1Q9NP79 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
VTA1Q9NP79 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VTA1Q9NP79 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VTA1Q9NP79 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VTA1Q9NP79 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.69■■□□□ 1.06
VTA1Q9NP79 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.69■■□□□ 1.06
VTA1Q9NP79 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VTA1Q9NP79 UPK3BP1-201ENST00000428678 509 ntBASIC21.69■■□□□ 1.06
VTA1Q9NP79 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.69■■□□□ 1.06
VTA1Q9NP79 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.69■■□□□ 1.06
VTA1Q9NP79 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.69■■□□□ 1.06
VTA1Q9NP79 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.69■■□□□ 1.06
VTA1Q9NP79 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VTA1Q9NP79 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VTA1Q9NP79 AC140113.3-201ENST00000605663 199 ntBASIC21.69■■□□□ 1.06
VTA1Q9NP79 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VTA1Q9NP79 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VTA1Q9NP79 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
VTA1Q9NP79 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
VTA1Q9NP79 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 AL023973.1-201ENST00000624619 620 ntBASIC21.68■■□□□ 1.06
VTA1Q9NP79 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.68■■□□□ 1.06
VTA1Q9NP79 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VTA1Q9NP79 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.68■■□□□ 1.06
VTA1Q9NP79 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
VTA1Q9NP79 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VTA1Q9NP79 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VTA1Q9NP79 KRT8P45-201ENST00000414328 1447 ntBASIC21.67■■□□□ 1.06
VTA1Q9NP79 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VTA1Q9NP79 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VTA1Q9NP79 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 AL441883.1-201ENST00000566170 1045 ntBASIC21.67■■□□□ 1.06
VTA1Q9NP79 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 AL121956.5-201ENST00000625261 221 ntBASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms