Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 TSPY7P-201ENST00000431358 1114 ntBASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 HLA-A-209ENST00000638375 975 ntBASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 KRT17P2-201ENST00000300992 1314 ntBASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM39Q9HCM9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 AC007952.6-201ENST00000573168 2673 ntBASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 AC003957.1-201ENST00000625108 2673 ntBASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TRIM39Q9HCM9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 AFG3L1P-217ENST00000557444 2447 ntBASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 MIR4785-201ENST00000585005 73 ntBASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM39Q9HCM9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 AL355355.2-201ENST00000442321 338 ntBASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 AC026471.5-201ENST00000615068 467 ntBASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 AC131212.4-201ENST00000623606 975 ntBASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 AL031985.4-201ENST00000642138 673 ntBASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms