Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
LIME1Q9H400 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIME1Q9H400 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.02■□□□□ 0.31
LIME1Q9H400 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIME1Q9H400 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LIME1Q9H400 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIME1Q9H400 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
LIME1Q9H400 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIME1Q9H400 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.01■□□□□ 0.31
LIME1Q9H400 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
LIME1Q9H400 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.01■□□□□ 0.31
LIME1Q9H400 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIME1Q9H400 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
LIME1Q9H400 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIME1Q9H400 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.01■□□□□ 0.31
LIME1Q9H400 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIME1Q9H400 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIME1Q9H400 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.01■□□□□ 0.31
LIME1Q9H400 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.01■□□□□ 0.31
LIME1Q9H400 ATP5G1P1-201ENST00000448724 379 ntBASIC17.01■□□□□ 0.31
LIME1Q9H400 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.01■□□□□ 0.31
LIME1Q9H400 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.01■□□□□ 0.31
LIME1Q9H400 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.01■□□□□ 0.31
LIME1Q9H400 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LIME1Q9H400 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.01■□□□□ 0.31
LIME1Q9H400 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIME1Q9H400 KRT8P36-201ENST00000489121 1440 ntBASIC17.01■□□□□ 0.31
LIME1Q9H400 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LIME1Q9H400 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
LIME1Q9H400 SMG8-203ENST00000578922 2178 ntBASIC17.01■□□□□ 0.31
LIME1Q9H400 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIME1Q9H400 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17■□□□□ 0.31
LIME1Q9H400 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17■□□□□ 0.31
LIME1Q9H400 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LIME1Q9H400 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17■□□□□ 0.31
LIME1Q9H400 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17■□□□□ 0.31
LIME1Q9H400 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LIME1Q9H400 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17■□□□□ 0.31
LIME1Q9H400 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17■□□□□ 0.31
LIME1Q9H400 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
LIME1Q9H400 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17■□□□□ 0.31
LIME1Q9H400 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
LIME1Q9H400 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
LIME1Q9H400 AC116562.4-201ENST00000641316 2276 ntBASIC17■□□□□ 0.31
LIME1Q9H400 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17■□□□□ 0.31
LIME1Q9H400 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIME1Q9H400 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17■□□□□ 0.31
LIME1Q9H400 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.99■□□□□ 0.31
LIME1Q9H400 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
LIME1Q9H400 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.99■□□□□ 0.31
LIME1Q9H400 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.99■□□□□ 0.31
LIME1Q9H400 AL158211.5-201ENST00000623583 2518 ntBASIC16.99■□□□□ 0.31
LIME1Q9H400 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.99■□□□□ 0.31
LIME1Q9H400 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
LIME1Q9H400 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.99■□□□□ 0.31
LIME1Q9H400 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 UPK3BP1-201ENST00000428678 509 ntBASIC16.99■□□□□ 0.31
LIME1Q9H400 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.99■□□□□ 0.31
LIME1Q9H400 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.99■□□□□ 0.31
LIME1Q9H400 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 AL358472.4-201ENST00000633140 710 ntBASIC16.99■□□□□ 0.31
LIME1Q9H400 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.99■□□□□ 0.31
LIME1Q9H400 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
LIME1Q9H400 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
LIME1Q9H400 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
LIME1Q9H400 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIME1Q9H400 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.98■□□□□ 0.31
LIME1Q9H400 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIME1Q9H400 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIME1Q9H400 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIME1Q9H400 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIME1Q9H400 INGX-201ENST00000359239 846 ntBASIC16.98■□□□□ 0.31
LIME1Q9H400 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 MESTP1-201ENST00000404287 994 ntBASIC16.98■□□□□ 0.31
LIME1Q9H400 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms