Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM56Q9BRZ2 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 AC093503.3-201ENST00000624917 2352 ntBASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM56Q9BRZ2 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 AL049812.1-201ENST00000432563 2267 ntBASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM56Q9BRZ2 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 MYC-209ENST00000641252 345 ntBASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM56Q9BRZ2 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.74
TRIM56Q9BRZ2 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 SLC29A4P1-201ENST00000398760 971 ntBASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms