Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
PAAF1Q9BRP4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
PAAF1Q9BRP4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 LIN28AP1-201ENST00000429574 405 ntBASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 AC007663.1-201ENST00000438948 1240 ntBASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 AL023803.3-201ENST00000615559 522 ntBASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PAAF1Q9BRP4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 ARMC10P1-201ENST00000313754 855 ntBASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 ATP5G1P1-201ENST00000448724 379 ntBASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 AC116562.4-202ENST00000641738 218 ntBASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 AC092338.2-201ENST00000568827 1415 ntBASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.69■□□□□ 0.9
PAAF1Q9BRP4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 SLC25A1P2-201ENST00000430693 912 ntBASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 CKBP1-201ENST00000565489 1086 ntBASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 AL590326.2-201ENST00000625139 305 ntBASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PAAF1Q9BRP4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 KRT8P11-201ENST00000409686 1436 ntBASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PAAF1Q9BRP4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms