Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 GCSHP5-201ENST00000443090 522 ntBASIC18.53■□□□□ 0.56
VMP1Q96GC9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 AL121906.2-201ENST00000621597 723 ntBASIC18.53■□□□□ 0.56
VMP1Q96GC9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 AC005082.1-201ENST00000413042 2259 ntBASIC18.53■□□□□ 0.56
VMP1Q96GC9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
VMP1Q96GC9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VMP1Q96GC9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VMP1Q96GC9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VMP1Q96GC9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.52■□□□□ 0.56
VMP1Q96GC9 C1QBPP2-201ENST00000528754 825 ntBASIC18.52■□□□□ 0.56
VMP1Q96GC9 PRKY-204ENST00000533551 1019 ntBASIC18.52■□□□□ 0.56
VMP1Q96GC9 MTDHP1-201ENST00000605323 784 ntBASIC18.52■□□□□ 0.56
VMP1Q96GC9 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.52■□□□□ 0.56
VMP1Q96GC9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 AL121829.2-201ENST00000620908 328 ntBASIC18.52■□□□□ 0.56
VMP1Q96GC9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.52■□□□□ 0.56
VMP1Q96GC9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VMP1Q96GC9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VMP1Q96GC9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
VMP1Q96GC9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VMP1Q96GC9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 AL158047.1-201ENST00000445918 881 ntBASIC18.51■□□□□ 0.55
VMP1Q96GC9 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
VMP1Q96GC9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VMP1Q96GC9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 RPPH1-201ENST00000516869 333 ntBASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms