Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 STARP1-201ENST00000397973 869 ntBASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 ATP5G2P1-201ENST00000433580 426 ntBASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC44A3Q8N4M1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 LINC01311-201ENST00000565162 1445 ntBASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 GCSHP2-201ENST00000560971 527 ntBASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 NEK4P2-201ENST00000580004 1012 ntBASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.87■□□□□ 0.77
SLC44A3Q8N4M1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SLC44A3Q8N4M1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SLC44A3Q8N4M1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC44A3Q8N4M1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms