Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 AC004980.1-204ENST00000429707 299 ntBASIC17.98■□□□□ 0.47
BEST3Q8N1M1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 AC131212.4-201ENST00000623606 975 ntBASIC17.98■□□□□ 0.47
BEST3Q8N1M1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 FSCN1P1-201ENST00000568912 1481 ntBASIC17.98■□□□□ 0.47
BEST3Q8N1M1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BEST3Q8N1M1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 MESTP1-201ENST00000404287 994 ntBASIC17.97■□□□□ 0.47
BEST3Q8N1M1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 MIR6786-201ENST00000616843 113 ntBASIC17.97■□□□□ 0.47
BEST3Q8N1M1 HLA-A-209ENST00000638375 975 ntBASIC17.97■□□□□ 0.47
BEST3Q8N1M1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
BEST3Q8N1M1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 B3GAT3P1-201ENST00000471720 806 ntBASIC17.96■□□□□ 0.47
BEST3Q8N1M1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 FITM1-202ENST00000559294 800 ntBASIC17.96■□□□□ 0.47
BEST3Q8N1M1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BEST3Q8N1M1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 AC138932.1-201ENST00000534164 6830 ntBASIC17.95■□□□□ 0.46
BEST3Q8N1M1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 AL691432.2-201ENST00000607222 2038 ntBASIC17.95■□□□□ 0.46
BEST3Q8N1M1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 AC011506.1-201ENST00000474329 610 ntBASIC17.95■□□□□ 0.46
BEST3Q8N1M1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.95■□□□□ 0.46
BEST3Q8N1M1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms