Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NUP54Q7Z3B4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 C1QL1P1-201ENST00000568105 661 ntBASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 AP001412.1-201ENST00000608405 714 ntBASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NUP54Q7Z3B4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 MIR718-201ENST00000390190 70 ntBASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AC008550.1-201ENST00000511500 884 ntBASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AL353708.3-201ENST00000610272 989 ntBASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP54Q7Z3B4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 RPS2P55-201ENST00000397318 883 ntBASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 AC012618.2-201ENST00000428058 849 ntBASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 AP002982.1-201ENST00000492365 877 ntBASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 AC107956.1-201ENST00000494359 873 ntBASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 AC066615.1-201ENST00000640911 628 ntBASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.92■□□□□ 0.46
NUP54Q7Z3B4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP54Q7Z3B4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
NUP54Q7Z3B4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NUP54Q7Z3B4 TREX1-205ENST00000625293 1783 ntBASIC17.91■□□□□ 0.46
NUP54Q7Z3B4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.91■□□□□ 0.46
NUP54Q7Z3B4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP54Q7Z3B4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP54Q7Z3B4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms