Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 AC104417.2-201ENST00000562989 1793 ntBASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF549Q6P9A3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF549Q6P9A3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 SDHAP1-207ENST00000440850 2000 ntBASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 TEX21P-204ENST00000641479 1693 ntBASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 AC026366.1-201ENST00000488803 879 ntBASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF549Q6P9A3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 TUBB8P6-201ENST00000436895 1288 ntBASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF549Q6P9A3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms